Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq99093 91.5 1e-13 seq99092 87.8 1e-12 >seq99093 Length=221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||| | ||||| |||| ||| | ||| ||||||||||||||||| ||||| | Sbjct 206 CCACCTCGAAGCCTTAATACCAAGTGAAGAGTCGATTCTTTTTGAATATTATAATCAG-- 149 Query 101072 ATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| | | | |||||| |||||||| || ||| |||| | |||||||| ||| | Sbjct 148 ATAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTG 89 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | | |||||||| || ||||||| ||| |||| Sbjct 88 GTATTCCTTCTTTATCTTGAATTTTTGCTTTTACAT 53 >seq99092 Length=231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| || | ||| || | ||||| |||||||||||||||||||| ||||| | Sbjct 206 CCACCTCTTAAACGTAATACTAAATGCAATGTTGATTCTTTTTGAATATTATAATCAG-- 149 Query 101072 ATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| | | | |||||| |||||||| || ||| |||| | |||||||| ||| | Sbjct 148 ATAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTG 89 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165 | | |||||||| || ||||||| ||| |||| Sbjct 88 GTATTCCTTCTTTATCTTGAATTTTTGCTTTTACAT 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408397496730252