Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq96271 145 6e-30 seq96269 145 6e-30 seq43933 114 1e-20 seq6934 98.7 8e-16 >seq96271 Length=453 Score = 145 bits (160), Expect = 6e-30 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 |||||| |||| || || || ||| ||||| || | ||||| | ||| | ||| Sbjct 249 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGTTTCAAAGCTTCA 190 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 | ||| | | || || || ||||||||||| || |||||||| || || || | || | Sbjct 189 ATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAAC 130 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || ||| || || |||| | | || || || || || ||||| ||||||||||| || Sbjct 129 CCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACA 70 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || || ||||||||||| || || || |||||||| || ||||||||||| | | | ||| Sbjct 69 CCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGACG 10 Query 29837 TAAAACTG 29844 ||||| || Sbjct 9 TAAAATTG 2 >seq96269 Length=446 Score = 145 bits (160), Expect = 6e-30 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 |||||| |||| || || || ||| ||||| || | ||||| | ||| | ||| Sbjct 198 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGTTTCAAAGCTTCA 257 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 | ||| | | || || || ||||||||||| || |||||||| || || || | || | Sbjct 258 ATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAAC 317 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || ||| || || |||| | | || || || || || ||||| ||||||||||| || Sbjct 318 CCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACA 377 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || || ||||||||||| || || || |||||||| || ||||||||||| | | | ||| Sbjct 378 CCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGACG 437 Query 29837 TAAAACTG 29844 ||||| || Sbjct 438 TAAAATTG 445 >seq43933 Length=829 Score = 114 bits (126), Expect = 1e-20 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||||||||| ||||| || || |||||||| || || || | || | ||| Sbjct 87 AAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAG 146 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | |||||||| || || | || |||||||| ||||| ||| | || ||||||||| Sbjct 147 CCGCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCG 206 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 | | | |||| ||| || ||| ||| ||||||||||| || |||| || | Sbjct 207 GTCAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCA 266 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30230 ||| ||||| | ||||||||| || || ||||| Sbjct 267 CGCCAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 >seq6934 Length=470 Score = 98.7 bits (108), Expect = 8e-16 Identities = 194/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| | |||||| || || || || || || || |||||||| || ||||| | || Sbjct 104 AAATGACGCCACTGAAATCCATAAACTGGGCCAAGATCTCCCTCCTCTCTGTGATGCAAA 163 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||| | ||| |||| ||||| || || ||||||| | | ||||| || Sbjct 164 CCTTGCTTGTTAAGAAAATCTCGTGAACCATTAGCATCCCAGAAATGAATTCCCTTATCA 223 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 | || ||| | || || | || || || ||||||||||||||||| | || | Sbjct 224 CTCAACTGTTTTGCATTAGTACAACCACTCACAAACCACAGCAGCTCCTCGGCCACTCCG 283 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA-CTGTCCCTT--GAGGCCGTACCTC 30253 |||||| || | ||| || |||||||| ||||| |||| || |||| | ||| Sbjct 284 CGCCAAAACACACGCTTTGTTGTGAGGAGAGGAAAGCTGTTGTTTCGCAGGCTAAATCTC 343 Query 30254 GCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTCT 30298 |||| || || ||||| | ||| || |||||||| ||| Sbjct 344 ATTTGAGCACCGAAAATGGAGATTGTTCCTGTACCTGTCCTATCT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404910682554808