Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq142104 324 1e-83 seq139941 315 6e-81 >seq142104 Length=1514 Score = 324 bits (358), Expect = 1e-83 Identities = 608/886 (69%), Gaps = 12/886 (1%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || |||||||| |||| ||| || || || || || ||||| || || ||||| || Sbjct 364 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 423 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || ||||| || || | || |||||| ||| || || ||||| || || Sbjct 424 TCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAACCAGA 483 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || |||||| |||||||| || ||||| |||| | | ||| || || || | Sbjct 484 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGC 543 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | || || || || | ||| | || |||||||| || || || ||| |||||| Sbjct 544 TTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATC 603 Query 4497 TCTTTTAT---TTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 |||||| ||| ||| |||||||| || || |||||| |||| | ||| ||| Sbjct 604 GATTTTATGACTTTTTCT---GATGGTTTGTTGACCAAGTATGAGAACATCATACAGGCA 660 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 || |||||||| | ||| ||||| | || || || || || || || |||| || ||| Sbjct 661 AAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGC 720 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || || |||||||| ||||| || || || ||||| || ||||| ||||| || ||| Sbjct 721 ATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCT 780 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCT-TTAATCC 4731 || || || ||||| || |||| | || | || ||| |||| | || |||| Sbjct 781 TCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCT--CTTTCTGGGTTGATCC 838 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | || | ||||| | ||||||| | | || || || ||||| | || || || || | Sbjct 839 AATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAA-A 897 Query 4792 ATTTACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | || || ||||||| | ||| | ||| ||||| || || | || || ||||||||| Sbjct 898 AGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCA 957 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || ||||| ||||| || || || || || || || ||||| || |||| ||||| Sbjct 958 GAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGG 1017 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 ||||| | | ||| | || || ||||| || || || || || || || || || || Sbjct 1018 ACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAG 1077 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGC 5030 || || | ||| || || || ||| ||| ||| | |||||| ||||| Sbjct 1078 AAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCT 1137 Query 5031 AAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTAC 5090 |||||| | | ||| ||||| || | ||||| || || ||||| || ||||||||| Sbjct 1138 TTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTAC 1197 Query 5091 ATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGT 5136 || ||||||||| ||| || || ||||| | ||||||| || Sbjct 1198 ATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATCGGT 1243 >seq139941 Length=1515 Score = 315 bits (348), Expect = 6e-81 Identities = 606/886 (68%), Gaps = 12/886 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || |||||||| |||| ||| || || || || || ||||| || || ||||| || Sbjct 1151 TTCTGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTC 1092 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || ||||| || || | || |||||| ||| || || ||||| || || Sbjct 1091 TCCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAACCAGA 1032 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || |||||| |||||||| || ||||| |||| | | ||| || || || | Sbjct 1031 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGC 972 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | || || || || | ||| | || |||||||| || || || ||| |||||| Sbjct 971 TTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATC 912 Query 4497 TCTTTTAT---TTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 |||||| ||| ||| |||||||| || || ||||| |||| | ||| ||| Sbjct 911 GATTTTATGACTTTTTCT---GATGGTTTGTTGACCAAGTACGAGAACATCATACAGGCA 855 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 || |||||||| | ||| ||||| | || || || || || || || |||| || ||| Sbjct 854 AAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGC 795 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || || |||||||| ||||| || || || ||||| || ||||| ||||| || ||| Sbjct 794 ATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCT 735 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCT-TTAATCC 4731 || || || ||||| || |||| | || | || ||| |||| | || |||| Sbjct 734 TCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCT--CTTTCTGGGTTGATCC 677 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | || | ||||| | |||||| | | || || || ||||| | || || || || | Sbjct 676 AATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAA-A 618 Query 4792 ATTTACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | || || ||||||| | ||| | ||| ||||| || || | || || ||||||||| Sbjct 617 AGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCA 558 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || ||||| ||||| || || || || || || || ||||| || |||| ||||| Sbjct 557 GAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGG 498 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 ||||| | | ||| | || || ||||| || || || || || || || || || || Sbjct 497 ACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAG 438 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGC 5030 || || | ||| || || || ||| ||| ||| | |||||| ||||| Sbjct 437 AAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCT 378 Query 5031 AAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTAC 5090 |||||| | | ||| ||||| || | ||||| || || ||||| || ||||||||| Sbjct 377 TTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTAC 318 Query 5091 ATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGT 5136 || ||||||||| ||| || || ||||| | ||||||| || Sbjct 317 ATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATCGGT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425732673518324