Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq96271 163 2e-35 seq96269 163 2e-35 seq43933 132 4e-26 seq6934 98.7 7e-16 seq44199 84.2 2e-11 >seq96271 Length=453 Score = 163 bits (180), Expect = 2e-35 Identities = 187/249 (75%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 27149 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 249 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 191 Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 | ||||| | || || || || |||||||| || |||||||| || || || | || Sbjct 190 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 131 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 ||| ||| || || |||| | | || || || || || ||||| |||||||||||||| Sbjct 130 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 71 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || ||||||||||| || || || ||||||||||| ||||||||||||| | | || Sbjct 70 ACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGAC 11 Query 27330 GTAAAACTG 27338 |||||| || Sbjct 10 GTAAAATTG 2 >seq96269 Length=446 Score = 163 bits (180), Expect = 2e-35 Identities = 187/249 (75%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 27149 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 198 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 256 Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 | ||||| | || || || || |||||||| || |||||||| || || || | || Sbjct 257 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 316 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 ||| ||| || || |||| | | || || || || || ||||| |||||||||||||| Sbjct 317 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 376 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || ||||||||||| || || || ||||||||||| ||||||||||||| | | || Sbjct 377 ACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGAC 436 Query 27330 GTAAAACTG 27338 |||||| || Sbjct 437 GTAAAATTG 445 >seq43933 Length=829 Score = 132 bits (146), Expect = 4e-26 Identities = 194/273 (71%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAA 27512 |||||||||||| ||| || | |||||| ||||||| ||||| || || || Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAA 88 Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 27572 || | ||| ||||| ||||| || || |||||||| || || || | || | ||||| Sbjct 89 GTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCC 148 Query 27573 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 27632 | |||||||| || || | || |||||||| ||||| ||| | || |||||||||| Sbjct 149 GCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCGGT 208 Query 27633 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 | | |||| ||| || ||| ||| ||||||||||| || |||| || | Sbjct 209 CAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCACG 268 Query 27693 CCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 27724 ||| ||||| | ||||||||| || || ||||| Sbjct 269 CCAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 >seq6934 Length=470 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 ||||| ||||| | ||| || || || || || || || || |||||||| || ||||| Sbjct 98 GCTCCAAAATGACGCCACTGAAATCCATAAACTGGGCCAAGATCTCCCTCCTCTCTGTGA 157 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 27624 | || || ||||| | ||| |||| ||||| || || ||||||| | | ||| Sbjct 158 TGCAAACCTTGCTTGTTAAGAAAATCTCGTGAACCATTAGCATCCCAGAAATGAATTCCC 217 Query 27625 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 27684 || || | || ||| | || || | || || || ||||||||||||||||| | Sbjct 218 TTATCACTCAACTGTTTTGCATTAGTACAACCACTCACAAACCACAGCAGCTCCTCGGCC 277 Query 27685 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA-CTGT 27729 || | |||||| || | ||| || |||||||| ||||| |||| Sbjct 278 ACTCCGCGCCAAAACACACGCTTTGTTGTGAGGAGAGGAAAGCTGT 323 >seq44199 Length=311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 207/312 (66%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 27253 GCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAG 27312 |||||||| ||||| || || | ||||| || | ||| | |||||| | | | || || Sbjct 311 GCGATGTTGAAGGGCACGCCCAAGCCCATATCACACGAGCGCTGGTACATCAGGCAGGAC 252 Query 27313 AGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || || | | || || ||||| || | ||| ||||| || | ||||||||| Sbjct 251 AGTTCACCGTTGGCAACATAGAACTGGCAGAACATGTGACACGGGGGCAACGCCATGAGG 192 Query 27373 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT- 27431 ||| || || |||||||| ||| | ||| || | || |||| | ||||| Sbjct 191 TGCAAATCCGCAGGATTCCAGGCTGACAGAAGGATACGACGATCAG-TGGGATCTTCCTT 133 Query 27432 GAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTAC 27485 ||| || | | |||| |||||||||||| ||| || | |||||| Sbjct 132 GATCTTCCGGATGCACTCGGC------CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGT 79 Query 27486 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 ||||||| ||||| || || || || | ||| ||||| ||||| || || ||||| Sbjct 78 GTGCATGTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAG 19 Query 27546 GTCTCCCTCTTC 27557 ||| || || || Sbjct 18 GTCGCCTTCCTC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368367721548668