Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_030933.1 Length=133798 Score E Sequences producing significant alignments: (Bits) Value seq2714 102 7e-17 seq246949 98.7 8e-16 seq252629 86.0 5e-12 >seq2714 Length=540 Score = 102 bits (112), Expect = 7e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 13799 GATTACAAAAACAGGTTTTTAGAAAATATGACATGAATAAACAAGGTAATAAATATGTTA 13858 ||||||||| | | | | | ||||||| | |||||||||||||| ||| | | | | Sbjct 18 GATTACAAAGAAAAATATCAAAAAAATATAAAATGAATAAACAAGGAAATTGTTTTATAA 77 Query 13859 AAACTAAAAATATTATTAAGTTAGAACGTAAAATAAGACACATAAGAAGAAAACTTAAAA 13918 ||||||| ||||||||||| |||||| |||| | || || ||||| || || Sbjct 78 AAACTAATAATATTATTAAATTAGAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAA 137 Query 13919 GTATAAGAAATAATCATATACACACAGAAACTaaaaaaaTAGTTGAAATGTTACCGAAAG 13978 ||||||||||||||||||||| || |||| |||||| || || | ||| | Sbjct 138 ATATAAGAAATAATCATATACATCAAGTAACTGCTAAAATAATTAAATTAAAACCATATA 197 Query 13979 AAATAGTTATAGAAGATTTACATGTTAAAGAAATGTTAAAAGATAA 14024 | | || || ||||||||| || | | | ||| | ||| |||| Sbjct 198 GAGTGGTGATGGAAGATTTAAATATAAGTGGCATGATGAAAAATAA 243 >seq246949 Length=325 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 13821 AAAATATGACATGAATAAACAAGGTAATAAATATGTTAAAACTAAAAATATTATTAAGTT 13880 ||||||| | |||||||||||||| ||| | | | |||||||| ||||||||||| || Sbjct 317 AAAATATAAAATGAATAAACAAGGAAATTGTTTTATAAAAACTAATAATATTATTAAATT 258 Query 13881 AGAACGTAAAATAAGACACATAAGAAGAAAACTTAAAAGTATAAGAAATAATCATATACA 13940 |||| |||| | || || ||||| || || ||||||||||||||||||||| Sbjct 257 AGAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAAATATAAGAAATAATCATATACA 198 Query 13941 CACAGAAACTaaaaaaaTAGTTGAAATGTTACCGAAAGAAATAGTTATAGAAGATTTACA 14000 || |||| |||||| || || | ||| | | | || || ||||||||| | Sbjct 197 TCAAGTAACTGCTAAAATAATTAAATTAAAACCATATAGAGTGGTGATGGAAGATTTAAA 138 Query 14001 TGTTAAAGAAATGTTAAAAGATAA 14024 | | | | ||| | ||| |||| Sbjct 137 TATAAGTGGCATGATGAAAAATAA 114 >seq252629 Length=245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/128 (76%), Gaps = 8/128 (6%) Strand=Plus/Minus Query 27671 AATACCTTAAATTGCTAGAACACCGTAAAGCTAACTAAACTACAAAGTAAGTC-GAAAGA 27729 ||| | || || |||| ||| || ||||||||||||||| |||| | | |||| | Sbjct 146 AATCCTTTGAACTGCTGGAAACCCTTAAAGCTAACTAAACCACAACATGACCATGAAATA 87 Query 27730 CTAGGCT-----TGAATGTTGAGAAATCAGAAAAAATTAGTTAGATGGTATAAGGTTAAA 27784 ||| | ||| |||| |||| |||||||||||||||||||| ||||||||||| Sbjct 86 --AGGGTGAGTGTGATGGTTGCGAAAGTAGAAAAAATTAGTTAGATGGCATAAGGTTAAA 29 Query 27785 TCCTAAGT 27792 |||||||| Sbjct 28 TCCTAAGT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426708853882172