Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq143705 140 3e-28 seq149515 134 1e-26 seq77635 93.3 4e-14 seq119667 87.8 2e-12 seq99092 84.2 2e-11 seq108713 82.4 6e-11 >seq143705 Length=477 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| |||| ||||||||||||||| ||||| ||||| ||| Sbjct 437 ATGCAGATTTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 378 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||||| | | | || || ||| || ||||| |||||| | ||| || ||| Sbjct 377 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 318 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | || || ||||| ||||| ||| | ||| || ||| |||||| Sbjct 317 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 258 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || || |||||||| |||||||| ||||| Sbjct 257 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACGTCTGCGTGGTGG 211 >seq149515 Length=449 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || |||||||| |||| ||||||||||||||| ||||| ||||| ||| Sbjct 17 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 76 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||||| | | | || || ||| || ||||| |||||| | ||| || ||| Sbjct 77 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 136 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | || || ||||| ||||| ||| | ||| || ||| |||||| Sbjct 137 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 196 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || || |||||||| |||||||| ||||| Sbjct 197 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACGTCTGCGTGGTGG 243 >seq77635 Length=207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 111102 GCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGA 111161 |||||| ||||| ||||| || || || ||||| || || | || ||||| | || Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 111162 TTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACA 111221 | | | | |||||| ||||||| || |||||||| |||| || ||||| Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 111222 AAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATAAT 111279 | | | |||| ||| || |||||||| |||||| || | | ||| | ||||| || Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCGTACATTAT--CTGATTACAAC 30 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||||||||| ||| |||||||||| Sbjct 29 ATCCAAAAAGAATCCACATTACATTTAGT 1 >seq119667 Length=392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || || || ||| | ||||| |||||||||||| | || ||| ||| Sbjct 24 ATGCAGATATTCGTGAAGACGCTAACCGGGAAAACCATTACCCTTGAGGTGGAGCCCTCT 83 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | | || || || ||| ||||| ||||| | || ||| ||| Sbjct 84 GATACTATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATCCCGCCCGACCAA 143 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||| | ||| || ||||| | |||||| | || || |||||| ||| Sbjct 144 CAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGATTACAAT 203 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || ||||| || || ||| | || | ||||| || || ||| Sbjct 204 ATTCAGAAGGAATCCACCCTTCATCTTGTTCTTCGTCTACGTGGAGGC 251 >seq99092 Length=231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 111175 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111234 |||||| ||||||| || |||||||| | || || |||||||| | || | | Sbjct 55 GTAAAAGCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTT 114 Query 111235 GCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATAATATACAAAAAGAAT 111292 || || |||||||| |||||| | | | ||| | ||||||||||| |||||||||| Sbjct 115 GCAGGTAAACAATTAGAAGATGGACGTACATTAT--CTGATTATAATATTCAAAAAGAAT 172 Query 111293 CTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | ||| | |||||||| || ||| | | ||||| Sbjct 173 CAACATTGCATTTAGTATTACGTTTAAGAGGTGG 206 >seq108713 Length=694 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || ||||| || || | || || |||||||| ||| | || || || Sbjct 653 AAGATGCAGATCTTTGTGAAGACTCTCACGGGTAAAACCATCACCCTTGAGGTTGAGGCC 594 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || ||| || ||| | || || |||||| ||||||||||| | || |||| Sbjct 593 AGTGATACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAAGGTATCCCTCCCGAT 534 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | || |||| || || ||||| ||||||||| ||| | |||| || Sbjct 533 CAACAACGTCTGATTTTCGCTGGGAAACAGTTGGAAGATGGCCGCACTCTCTCCGACTAC 474 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT---GCGCGGTGGCAATAA 111332 || || || ||||| || || || || | ||| | ||||| | |||| ||||| || Sbjct 473 AACATCCAGAAAGAGTCCACCCTCCACCTCGTGCTTCGTCTTAGGGGCGGAGGCAAGAA 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420510427584928