Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq174639 313 3e-80 seq75038 262 5e-65 seq12672 232 8e-56 seq75039 183 4e-41 seq174640 176 5e-39 seq25705 172 7e-38 seq174641 161 1e-34 seq23841 138 1e-27 seq251946 125 8e-24 >seq174639 Length=919 Score = 313 bits (346), Expect = 3e-80 Identities = 561/818 (69%), Gaps = 6/818 (1%) Strand=Plus/Plus Query 177616 TCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTC 177675 ||||| | |||||||| || | || || || ||| |||| ||| ||||| || | Sbjct 96 TCCACAACAAATCGTCTCTACATTGGGTGCTTTGGTATCCTAATGTTCCCT---CTTTTA 152 Query 177676 GCT---GCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGAC 177732 || || |||| || ||| ||||| | ||| ||| | || || || || Sbjct 153 ACTTTAGCAACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGAT 212 Query 177733 GGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCT 177792 || || | ||||| || ||||| || || | |||||||| ||||| || | || ||| Sbjct 213 GGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCT 272 Query 177793 GTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCT 177852 || | || |||||| |||||||| | || |||||||| | ||||| || | Sbjct 273 GTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGA 332 Query 177853 CTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATC 177912 | |||||||| | || ||||||||| | | ||| | || | | || || || | Sbjct 333 TTTGATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTT 392 Query 177913 GGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCC 177972 ||| | | | |||||| | || |||||| | || | | |||||||| | || Sbjct 393 GGTGTTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCA 452 Query 177973 TGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTAT 178032 ||||| | |||||| | ||| || || || | ||||| | ||| ||||| |||||||| Sbjct 453 TGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTAT 512 Query 178033 CCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAAC 178092 || | ||||||| | || || || | ||||| | || || ||||| || || || Sbjct 513 CCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAAT 572 Query 178093 TACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGC 178152 | |||||||| ||||||||||| || ||||| | ||||| || ||||| || | || Sbjct 573 TTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGA 632 Query 178153 GTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCC 178212 || |||||||| ||||| ||||| | || ||||| ||||| ||||| | ||||| || Sbjct 633 GTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCT 692 Query 178213 TCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAA 178272 || || || ||||| | | | || | || ||| || ||||| |||||| Sbjct 693 TCACTTCTTGCAGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAA 752 Query 178273 GAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAA 178332 ||||| || || || | ||| || || |||||||| || ||| | || || || ||| Sbjct 753 GAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAA 812 Query 178333 TACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTC 178392 || || |||||||| ||||| ||| || ||||||||||| ||||| ||||| ||| | Sbjct 813 TATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATT 872 Query 178393 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGC 178430 || || |||||||| || ||||| || || || ||||| Sbjct 873 GGGATTTGGTTCACAGCACTTGGAGTAAGTACAATGGC 910 >seq75038 Length=481 Score = 262 bits (290), Expect = 5e-65 Identities = 348/481 (72%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017 ||||| ||||| || ||||| |||||| || || | |||||| || || || |||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077 ||||| | |||| || | |||||||| || || || || | ||||| | || || Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137 || || ||||| | ||| |||| |||||||||||||| || || | ||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197 || || ||||| || || |||||||| ||||||||||| | || ||| ||||| ||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 178198 TCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA--GAACTATG 178255 || |||||||||| || | |||||||||| || || || ||| ||| || || Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAA--TCAACAAATGCTG 182 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||| | ||||| ||||||||||| || || ||||| || || || |||||||| || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 |||| | || |||||||| || || ||||| ||||| || || | || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | |||||||| || || || ||||||||| || | || || || |||||||| | Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 178436 A 178436 | Sbjct 1 A 1 >seq12672 Length=424 Score = 232 bits (256), Expect = 8e-56 Identities = 308/426 (72%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 178013 CTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGG 178072 |||| ||||| | |||| || | |||||||| || || || || | ||||| | | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 178073 GTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 178132 | || || || ||||| | ||| |||| |||||||||||||| || || | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 178133 ACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGC 178192 | || || || ||||| || || |||||||| ||||||||||| | || ||| |||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 178193 ACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA--GAA 178250 | ||||| |||||||||| || | |||||||||| || || || ||| ||| || Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAA--TCAACAAA 238 Query 178251 CTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTA 178310 |||||| | ||||| ||||||||||| || || ||||| || || || |||||||| Sbjct 239 TGCTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTA 298 Query 178311 CTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTT 178370 || ||||| | || |||||||| || || ||||| ||||| || || | || ||||| Sbjct 299 TTTTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTT 358 Query 178371 CCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGC 178430 | | || |||||||| || || || ||||||||| || | || || || ||||| Sbjct 359 CTTAGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGC 418 Query 178431 ATTCAA 178436 ||| || Sbjct 419 ATTTAA 424 >seq75039 Length=421 Score = 183 bits (202), Expect = 4e-41 Identities = 217/293 (74%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 177686 TCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 ||||| || || | ||||| || ||||| ||||| || || || || || || |||||| Sbjct 294 TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGAA 235 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || || ||||||| | | ||||| ||||| || ||| | || ||| || ||||| || Sbjct 234 CCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTACT 175 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 || ||||| |||||| | || || ||||| || |||||||| |||||| | ||||| ||| Sbjct 174 TCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGG 115 Query 177865 CTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCA 177924 || || |||||||| |||| ||| | || | | |||||| | | || || | | Sbjct 114 CTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGC 55 Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGAT 177977 || ||||| ||||| ||||||||||| | || ||||| ||||| || ||||| Sbjct 54 TATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq174640 Length=289 Score = 176 bits (194), Expect = 5e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 178254 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTT 178313 ||| || ||||| ||||||||||| || || || | ||| || || |||||||| || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 178314 CGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCT 178373 ||| | || || || ||||| || |||||||| ||||| ||| || ||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 178374 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATT 178433 ||||| ||||| ||| | ||||| |||||||| || ||||| || || || ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 178434 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGAT 178473 |||| | || ||||| ||||||||||| |||||| | ||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq25705 Length=358 Score = 172 bits (190), Expect = 7e-38 Identities = 218/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 179159 TCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTA 179218 |||||||| || || || ||||||||||| ||||| ||||| ||| | ||||| Sbjct 318 TCTCATAGCATTTTCCCTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTA 259 Query 179219 CAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCC 179278 |||||| | || || || || ||||| || || | | ||||| || || || ||||| Sbjct 258 TAATGCACTTGCATTCTCAGGACCAATAGCAGTTTATACATCTGTCTTCCTAATTTATCC 199 Query 179279 TCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTT 179338 || || || || ||||||||||| || ||||| ||||| || || ||||| || Sbjct 198 ACTTGGTCAATCTAGCTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATT 139 Query 179339 CCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGT 179398 |||| | ||||| || || || || || ||||| | || || || |||||||||||||| Sbjct 138 CCTATTATTCCTTCAAGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGT 79 Query 179399 AGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACAC 179458 ||| || || |||| || ||||| || | || || ||||||||||| || | ||||| Sbjct 78 AGCTGGAATATTGGGAGGTGCATTACTATCAGCTATCCATGGTGCTACTGTCGTTAACAC 19 >seq174641 Length=312 Score = 161 bits (178), Expect = 1e-34 Identities = 209/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 177929 TGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCAT 177988 ||||| | || |||||| | || | | |||||||| | || ||||| | |||||| | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 177989 ACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTT 178048 ||| || || || | ||||| | ||| ||||| |||||||||| | ||||||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 178049 CTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCC 178108 || || || | ||||| | || || ||||| || || || | |||||||| |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 178109 AAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTG 178168 ||||||| || ||||| | ||||| || ||||| || | || || |||||||| |||| Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 178169 GTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCT 178217 | ||||| | || ||||| ||||| ||||| | ||||| || || || Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq23841 Length=230 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 179516 AGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGC 179575 ||| || || ||||| |||||||| || || ||||| ||||||||| | |||||| | || Sbjct 33 AGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGGTGTAGC 92 Query 179576 CTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTG 179635 |||| || ||| | ||||| |||||||| ||| | ||||| ||| | ||| | || Sbjct 93 CTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGGTATGTG 152 Query 179636 GACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTC 179695 ||| ||| |||||||| ||||| | ||| |||| || ||||||||||| ||| |||| Sbjct 153 GACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTTTATTTC 212 Query 179696 ACAAGA 179701 ||||| Sbjct 213 TCAAGA 218 >seq251946 Length=233 Score = 125 bits (138), Expect = 8e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 177823 CACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCT 177882 ||||| ||||| || |||||||| || ||| | ||||| ||| | || |||||||| ||| Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 177883 TTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGG 177942 | || | || | | || || | | || ||| | || || |||||||||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 177943 GAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTC 178002 ||||| ||| || ||||||||||||| ||||||| ||| || | | | || || || Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 178003 GCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGG 178046 || |||||| | || || || ||||| ||||| | |||||||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594421169772480