Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq75038 228 1e-54 seq174639 217 2e-51 seq25705 194 2e-44 seq12672 194 2e-44 seq174640 167 3e-36 seq75039 152 6e-32 seq251946 134 2e-26 seq23841 95.1 1e-14 >seq75038 Length=481 Score = 228 bits (252), Expect = 1e-54 Identities = 339/481 (70%), Gaps = 0/481 (0%) Strand=Plus/Minus Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCG 169769 |||| || |||||||||||||| ||| ||||| || | ||| ||||| || || | | Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 169770 CTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTA 169829 | || || | | ||||| |||| ||||| || || || || | |||||| | || | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 169830 TCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889 | || ||||| || || | ||| | || |||||||| ||||| || || | ||||| | Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 169890 CCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACG 169949 | || || ||| | ||||| || || ||||||||||| || | ||| || ||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 169950 GTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATG 170009 || | || ||||| | | |||||||| || || || || || || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 170010 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCG 170069 |||| | ||||| ||||||||||| || || ||||| || || || || ||||| || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 170070 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 170129 |||| | || |||||||| ||||| ||||| ||||| || || | || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 170130 CAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCA 170189 | |||||||| ||||| || |||||||| || | || | || || ||||| || | Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 170190 A 170190 | Sbjct 1 A 1 >seq174639 Length=919 Score = 217 bits (240), Expect = 2e-51 Identities = 496/743 (67%), Gaps = 4/743 (1%) Strand=Plus/Plus Query 169432 AGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCAT 169491 |||||| | | || |||| || || || ||| || | || || || || || || Sbjct 158 AGCAACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAAT 217 Query 169492 CCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 169551 | ||||| || ||||| || || | ||||| || ||||| || | || ||||| | Sbjct 218 AAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAAT 277 Query 169552 GCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGA 169611 || ||| || || || || |||| |||||||| | ||||| || | | || Sbjct 278 ACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGA 337 Query 169612 TGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCAT 169671 ||| || || || || |||||| | | ||| | || || | || || | | || | Sbjct 338 TGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGT 397 Query 169672 CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGAT 169731 | || |||||| | || |||||||| | | | |||||| | || ||||| Sbjct 398 TGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGAT 457 Query 169732 CTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTT 169791 | ||| |||| ||| || || |||| ||||| | || || || | || || || | Sbjct 458 ATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAAT 517 Query 169792 TGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACAT 169851 ||| |||| || || || | |||||| | || || ||||| ||||| | || Sbjct 518 TGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTAT 577 Query 169852 GCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGC 169911 ||| || |||||||| || || ||||| | ||||| || ||||| || || || || || Sbjct 578 GCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGC 637 Query 169912 GGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCT 169971 || || ||||| || || | ||||| || ||||| ||| | || || || || Sbjct 638 TGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 697 Query 169972 TGTCCGTGAAACCACCG-AGA-ACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAA 170029 | | ||||| | | ||| | || || || ||| || ||||| ||||||||| Sbjct 698 TCTTGCAGAAACTGCAGGAGATATTAG--CCTAAATGTTGGATATAAGTTTGGTCAAGAA 755 Query 170030 GAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATAC 170089 || || || || | ||| || || || ||||| || ||| | || || || ||||| Sbjct 756 GATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATAT 815 Query 170090 GCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGC 170149 ||||||||||| ||||| ||| || ||||||||||| ||||| ||||| ||| |||| Sbjct 816 GCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGG 875 Query 170150 ATCTGGTTCACCGCTCTTGGTGT 170172 || |||||||| || ||||| || Sbjct 876 ATTTGGTTCACAGCACTTGGAGT 898 >seq25705 Length=358 Score = 194 bits (214), Expect = 2e-44 Identities = 236/319 (74%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 170911 TTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGATTAGAC 170970 ||| |||||||| || || || ||||||||||| || || || ||||||| Sbjct 322 TTGGTCTCATAGCATTTTCCCTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGAC 263 Query 170971 CGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGC-GTGTTCCTCATC 171029 | || |||||| | || ||||| || || || || || | | || | || ||||| || Sbjct 262 CTTATAATGCACTTGCATTCTCAGGACCAATAGCAGTTTATA-CATCTGTCTTCCTAATT 204 Query 171030 TATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTC 171089 ||||| ||||| || || || |||||||| ||||| |||||| ||||| || |||||| Sbjct 203 TATCCACTTGGTCAATCTAGCTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTC 144 Query 171090 CGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATG 171149 || ||||| | ||||| |||||||| || || |||||| | ||||| ||||| |||||| Sbjct 143 CGATTCCTATTATTCCTTCAAGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATG 84 Query 171150 GGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAG 171209 ||||| || || || | || |||||||| || || || || ||||||| ||| || | Sbjct 83 GGTGTAGCTGGAATATTGGGAGGTGCATTACTATCAGCTATCCATGGTGCTACTGTCGTT 24 Query 171210 AATACTTTGTATGAAGATG 171228 || ||| | ||| |||||| Sbjct 23 AACACTATTTATCAAGATG 5 >seq12672 Length=424 Score = 194 bits (214), Expect = 2e-44 Identities = 287/407 (71%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 169784 TACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTT 169843 ||||| |||| ||||| || || || || | |||||| | || || || ||||| || Sbjct 18 TACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTC 77 Query 169844 AACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTT 169903 || | ||| | || |||||||| ||||| || || | ||||| || || || ||| | Sbjct 78 AATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTA 137 Query 169904 GGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACT 169963 ||||| || || ||||||||||| || | ||| || ||||| ||| | || ||| Sbjct 138 GGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACT 197 Query 169964 TCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 170023 || | | |||||||| || || || || || || |||||| | ||||| Sbjct 198 TCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCGGA 257 Query 170024 CAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTC 170083 ||||||||||| || || ||||| || || || || ||||| || ||||| | || ||| Sbjct 258 CAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTC 317 Query 170084 CAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTT 170143 ||||| ||||| ||||| ||||| || || | || |||||| | || |||||||| Sbjct 318 CAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTA 377 Query 170144 GTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAA 170190 ||||| || |||||||| || | || | || || ||||| || || Sbjct 378 GTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 424 >seq174640 Length=289 Score = 167 bits (184), Expect = 3e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 170008 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTT 170067 ||| || ||||| ||||||||||| || || || | ||| || || || ||||| || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 170068 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCT 170127 ||| | || || || ||||| ||||||||||| ||||| ||| || ||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 170128 CGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTT 170187 ||||| ||||| ||| |||| || |||||||| || ||||| || || ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 170188 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGAT 170227 |||| | || ||||| ||||||||||| |||||| | ||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq75039 Length=421 Score = 152 bits (168), Expect = 6e-32 Identities = 249/359 (69%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 169373 ACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCA 169432 || || ||||| | ||| | |||||||| || || ||||| || | | || Sbjct 360 ACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACA 301 Query 169433 GCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATC 169492 || ||| || || || || || || | | ||| || || || || || || || || Sbjct 300 GCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATT 241 Query 169493 CGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTG 169552 || ||||| ||| ||||||| | | ||||| ||||| || || | || ||| || | Sbjct 240 CGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATT 181 Query 169553 CCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGAT 169612 || |||| |||||||| ||| | || || ||||| || |||||||| || | | ||| Sbjct 180 CCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGAT 121 Query 169613 GAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATC 169672 |||||| | || || ||||| |||| ||| | |||| | |||||| || | || || Sbjct 120 GAATGGCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATT 61 Query 169673 TATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGAT 169731 | | || ||||| ||||| |||||| | || | |||||| || |||||||||||||| Sbjct 60 TGTTGCTATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq251946 Length=233 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 169572 GTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTG 169631 || ||||||| ||||| || |||||||| ||| | | ||||||||||| || || |||| Sbjct 233 GTATTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTG 174 Query 169632 GTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTG 169691 | |||| || || |||| | || || | | || ||| | ||| || ||||||| Sbjct 173 GCCCTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTG 114 Query 169692 AGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTC 169751 |||||||| | |||||| | |||||||| || ||||||| |||||||| | | || | Sbjct 113 AGTGGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCAC 54 Query 169752 CCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGG 169800 | || || ||||| | || ||||| || || || || |||| ||||| Sbjct 53 CTGTAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 >seq23841 Length=230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 171273 GAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCG 171332 ||||| || ||||| ||||| || ||||||||||| ||||| ||| | |||||| | || Sbjct 34 GAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGGTGTAGCC 93 Query 171333 TTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGG 171392 ||| || ||| | ||| | |||||||| ||||| ||||| ||| | ||| | | | Sbjct 94 TTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGGTATGT-G 152 Query 171393 GTCAGTAGTC--TGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTT 171445 | || | || | || || ||||| | || ||||||| || ||||||||||| Sbjct 153 GACA-TCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590325365290560