Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq142104 246 3e-60 seq139941 246 3e-60 seq55664 122 9e-23 seq92029 82.4 8e-11 seq89999 82.4 8e-11 >seq142104 Length=1514 Score = 246 bits (272), Expect = 3e-60 Identities = 623/936 (67%), Gaps = 26/936 (3%) Strand=Plus/Plus Query 23160 TTAAAAATCTTCATCTAAAGTGAATTTCA----CTGCTTTATCACTATTCATAACACCCA 23215 |||||||| ||| || | |||||||| ||||| | | | |||| || || Sbjct 306 TTAAAAATTTTCGTCAAGTGTGAATTTATTCTCCTGCTGTTT----ACTCATCACGCCTG 361 Query 23216 TTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 || || ||||| ||||| | |||| || ||||| |||||||| ||||| || || || Sbjct 362 CCTTCTGGTATTCTCCAACTC-TCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATG 420 Query 23275 TTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA--CA--TGATAATTC 23330 || ||||| || |||||||| || || ||| || || |||| || ||| | Sbjct 421 TTCTCCATGAAGTCAAATGGGTTTTTAGCATTGTAAAC--CTTTGAGCAGTTGAGAGCAA 478 Query 23331 CTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACC 23390 | | ||| || || || ||||||||||| || || ||||||| | ||| || || Sbjct 479 CC--AGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCC 536 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAG-AATAGTTTTTCAATGGAAACAGCATCTT 23449 || || || ||||||| || || | |||| ||| || ||||||| ||||||||||| Sbjct 537 GATAAGCTTAACTGGAAGGGCTTC-TGTAAGGAATTCTTGTTCAATGACAACAGCATCTT 595 Query 23450 TAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTA---AATACTTAAACAATA 23506 ||||| || |||| ||| | ||| | || | | || |||| | Sbjct 596 GGATTATCGATTTTATGACTTTTTCT---GATGGTTTGTTGACCAAGTATGAGAACATCA 652 Query 23507 AACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTA 23566 ||| ||||| |||||||| || || || || | ||| || | ||||| || || |||| Sbjct 653 TACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTA 712 Query 23567 ATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGA 23626 |||||||| || | ||||| | ||| || || |||||||| || || || |||| Sbjct 713 GACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGA 772 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAG 23686 | || || || ||||| |||||||| || | | |||| | | ||| | | Sbjct 773 AGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGT 832 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 ||||| || | ||| | ||| || | ||||| ||||| ||||| || | Sbjct 833 TGATCCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCAT 892 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | || || |||||| | || || || || ||||| | | ||| |||| Sbjct 893 TGAAAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACA 952 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 ||||||| || ||||| || || || || || || ||||| |||||||| || || | | Sbjct 953 TTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAA 1012 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 ||| || || | ||| | | | | || || || || ||||| ||||| ||||||| Sbjct 1013 CTTGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAG 1072 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAAT 23986 | |||||||||||||| | || || |||| ||||||||| || | ||| ||| | Sbjct 1073 CGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGT 1132 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 ||| ||||||| || | ||| ||||| || ||||||| || || || | Sbjct 1133 CATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTT 1192 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAA 24082 | |||||| |||||||||| |||| ||| || |||| Sbjct 1193 TGTACATTTGCCAAATATCTTTATATTGGATGGGAA 1228 >seq139941 Length=1515 Score = 246 bits (272), Expect = 3e-60 Identities = 623/936 (67%), Gaps = 26/936 (3%) Strand=Plus/Minus Query 23160 TTAAAAATCTTCATCTAAAGTGAATTTCA----CTGCTTTATCACTATTCATAACACCCA 23215 |||||||| ||| || | |||||||| ||||| | | | |||| || || Sbjct 1209 TTAAAAATTTTCGTCAAGTGTGAATTTATTCTCCTGCTGTTT----ACTCATCACGCCTG 1154 Query 23216 TTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 || || ||||| ||||| | |||| || ||||| |||||||| ||||| || || || Sbjct 1153 CCTTCTGGTATTCTCCAACTC-TCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATG 1095 Query 23275 TTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA--CA--TGATAATTC 23330 || ||||| || |||||||| || || ||| || || |||| || ||| | Sbjct 1094 TTCTCCATGAAGTCAAATGGGTTTTTAGCATTGTAAAC--CTTTGAGCAGTTGAGAGCAA 1037 Query 23331 CTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACC 23390 | | ||| || || || ||||||||||| || || ||||||| | ||| || || Sbjct 1036 CC--AGAAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCC 979 Query 23391 TATTAGTTTTACTGGAATCGCATCATATAAG-AATAGTTTTTCAATGGAAACAGCATCTT 23449 || || || ||||||| || || | |||| ||| || ||||||| ||||||||||| Sbjct 978 GATAAGCTTAACTGGAAGGGCTTC-TGTAAGGAATTCTTGTTCAATGACAACAGCATCTT 920 Query 23450 TAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTA---AATACTTAAACAATA 23506 ||||| || |||| ||| | ||| | || | | ||| |||| | Sbjct 919 GGATTATCGATTTTATGACTTTTTCT---GATGGTTTGTTGACCAAGTACGAGAACATCA 863 Query 23507 AACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTA 23566 ||| ||||| |||||||| || || || || | ||| || | ||||| || || |||| Sbjct 862 TACAGGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTA 803 Query 23567 ATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGA 23626 |||||||| || | ||||| | ||| || || |||||||| || || || |||| Sbjct 802 GACCTGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGA 743 Query 23627 AAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAG 23686 | || || || ||||| |||||||| || | | |||| | | ||| | | Sbjct 742 AGATTCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGT 683 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 ||||| || | ||| | || || | ||||| ||||| ||||| || | Sbjct 682 TGATCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCAT 623 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | || || |||||| | || || || || ||||| | | ||| |||| Sbjct 622 TGAAAAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACA 563 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 ||||||| || ||||| || || || || || || ||||| |||||||| || || | | Sbjct 562 TTTCAGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAA 503 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 ||| || || | ||| | | | | || || || || ||||| ||||| ||||||| Sbjct 502 CTTGGACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAG 443 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAAT 23986 | |||||||||||||| | || || |||| ||||||||| || | ||| ||| | Sbjct 442 CGAAGAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGT 383 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 ||| ||||||| || | ||| ||||| || ||||||| || || || | Sbjct 382 CATCTTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTT 323 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAA 24082 | |||||| |||||||||| |||| ||| || |||| Sbjct 322 TGTACATTTGCCAAATATCTTTATATTGGATGGGAA 287 >seq55664 Length=318 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 64429 TGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAATAT 64488 |||| | |||||||||||||| || |||||| | ||| | || || ||||| ||| | || Sbjct 17 TGTTTTAGGAATTGATGAAGGCCAGTTTTTTCCAGATGTGGTGGAGTTTTCAGAAGAAAT 76 Query 64489 GGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAACC 64548 ||| | | ||||||| |||||| || | || ||||||| |||| | || | | Sbjct 77 GGCTAGTCTTGGAAAAACTGTAATAATTGCTGCATTAGATGGAACATTTCAACGGAGGGC 136 Query 64549 ATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGCTAT 64608 ||||| | || | |||| ||||| ||||| |||| || | ||| | ||||| | Sbjct 137 TTTTGGCAGCATATTGGATCTTGTTCCTTTAGCAGAAAGCGTCGTCAAACTTAATGCAGT 196 Query 64609 ATGTAAAATATGTTTCAAAGATGCTGCATTTACTAAAAGATT 64650 |||| || |||||||||||||||||||| |||||||| Sbjct 197 TTGTATGCATTGCTTCAAAGATGCTGCATTTACAAAAAGATT 238 >seq92029 Length=736 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582 ||| ||||||||||| | | || | ||||| ||||| || | || ||||| || || Sbjct 336 ATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACC 277 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 ||| || || | ||| || |||||| || |||||| || | || ||||| || || Sbjct 276 TCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGC 217 Query 23643 CGCAAAGGCCACAAGACG 23660 |||||| ||||||||||| Sbjct 216 CGCAAATGCCACAAGACG 199 >seq89999 Length=590 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582 ||| ||||||||||| | | || | ||||| ||||| || | || ||||| || || Sbjct 70 ATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACC 129 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 ||| || || | ||| || |||||| || |||||| || | || ||||| || || Sbjct 130 TCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGC 189 Query 23643 CGCAAAGGCCACAAGACG 23660 |||||| ||||||||||| Sbjct 190 CGCAAATGCCACAAGACG 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519838611679200