Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq67374 118 1e-21 seq190700 91.5 2e-13 >seq67374 Length=1687 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| |||||||||||||| | || |||||| | | Sbjct 658 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCA 599 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | ||||| || |||||||| | ||||| Sbjct 598 GACACCATTGAGAACG-TCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 540 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || || || |||||||| || | || || || | |||||||| Sbjct 539 ACAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTACAA 480 Query 40869 CATCCAGAAGGA 40880 ||||||||| || Sbjct 479 CATCCAGAAAGA 468 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 1342 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCA 1283 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| |||||| | |||||||| || ||||| | ||||| Sbjct 1282 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAA 1223 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||| |||| || | || || || | ||||||||| Sbjct 1222 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAAC 1163 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| | || || || Sbjct 1162 ATCCAGAAAGAGTCTACTCTTCA 1140 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| ||||| ||||| ||||||||| | || |||||| | | Sbjct 1571 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCATC 1512 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||| | |||||| | |||||||| || ||||| | || || Sbjct 1511 AGACACCATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCTCCAGATCA 1452 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| |||||||| || | || || || | ||||| || Sbjct 1451 GCAGAGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACACTGAGTGACTATAA 1392 Query 40869 CATCCAGAAGGA 40880 ||||||||| || Sbjct 1391 CATCCAGAAAGA 1380 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| |||||||||||||| | || || ||| | | Sbjct 1114 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCA 1055 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | |||||| | |||||||| || ||||| | ||||| Sbjct 1054 GACACCATTGAGAACG-TCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCA 996 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || || || ||| |||| || | || || || | |||||||| Sbjct 995 ACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAA 936 Query 40869 CATCCAGAAGGA 40880 ||||||||| || Sbjct 935 CATCCAGAAAGA 924 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||||||||||||| | || || ||| | | Sbjct 886 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCATCA 827 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||||| || || ||||| | || ||| Sbjct 826 GACACTATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 767 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||| |||| || | || || || | ||||||||| Sbjct 766 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACACTGAGTGACTACAAC 707 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 706 ATCCAGAAAGA 696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||| | |||||| | ||||| || || ||||| | || ||||| || ||||| Sbjct 245 AACG-TCAAAGCAAAAATCCAAGACAAGGAAGGTATCCCTCCAGATCAGCAGCGTCTCAT 187 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || |||||||||||||| || | || || || | ||||||||||||||||| || Sbjct 186 CTTTGCCGGCAAACAGCTGGAAGATGGTCGTACACTGAGTGACTACAACATCCAGAAAGA 127 >seq190700 Length=4627 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| | || || || || || || || |||| | || || |||| |||||| Sbjct 2880 GAAAACCCAAGGCGTTTTGTCATATTTCCAATTGAATATCATGATATCTGGCAGATGTAC 2821 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 ||||| || || ||||| || ||||| | ||||| || || |||| |||||| || | Sbjct 2820 AAAAAAGCGGAAGCGTCATTTTGGACGGCTGAGGAAGTAGATTTGTCAAAGGACTTGATC 2761 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 | ||||| || |||| || | || | ||||| || || || |||| ||||| Sbjct 2760 CATTGGGAAGGCCTGAAAGATGATGAAAGGCATTTTATTTCACATGTATTGGCTTTTTTT 2701 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 || || || || ||||| ||||| || || |||| Sbjct 2700 GCTGCAAGTGATGGCATTGTCAATGAAAACTTGGT 2666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513813585418800