Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq67374 132 4e-26 >seq67374 Length=1687 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| ||||| || |||||||| || |||| || || ||| || Sbjct 450 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCC 509 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||||||||| || || ||||| ||||| |||||||| Sbjct 510 AGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 569 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| | || | |||||||| | || | ||||| Sbjct 570 ATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGT-TCGACCTCCAGAGTGATGGTTTT 628 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| ||||| |||||||| Sbjct 629 GCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| ||||| || |||||||| || |||| || || ||| || Sbjct 678 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGGCCATCTTCC 737 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| ||||||||||||||||||| ||||| || || |||||||| Sbjct 738 AACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGG 797 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | ||||| | || | || ||||| | ||| | ||||| Sbjct 798 ATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGT-TCAACCTCAAGGGTGATGGTTTT 856 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| ||||| |||||||| Sbjct 857 GCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| ||||| || |||||||| || |||| || || ||| || Sbjct 906 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCC 965 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| ||||||||||||| || || || || || || || ||||| Sbjct 966 AACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTGG 1025 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | || | |||||| | || | || ||||| | || | ||||| Sbjct 1026 ATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGT-TCAACCTCCAGAGTGATGGTTTT 1084 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| ||||| |||||||| Sbjct 1085 GCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||||||||| || |||||||| || |||| || || ||| || Sbjct 1134 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCC 1193 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| ||||||||||||| || || || || || || || ||||| Sbjct 1194 AACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTGG 1253 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||||| | || | |||||| | || | || ||||| | ||| | || || Sbjct 1254 ATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGT-TCAACCTCAAGGGTGATGGTCTT 1312 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| || || |||||||| Sbjct 1313 GCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| ||||| || |||||||| || |||| || || ||| || Sbjct 109 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCC 168 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||||||||||||||| ||||| || || ||||||||| Sbjct 169 AGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCTTGG 228 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGT 118677 |||||| ||| || | || | ||||| Sbjct 229 ATTTTTGCTTTGACGTTCTCAATGGTGT 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432676418592460