Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq67374 105 8e-18 seq482 100 3e-16 seq14741 98.7 1e-15 seq4354 95.1 1e-14 seq85835 89.7 6e-13 seq63917 89.7 6e-13 seq40372 89.7 6e-13 seq6376 89.7 6e-13 >seq67374 Length=1687 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| ||| ||| || || | || || |||||||||||||| || Sbjct 468 TCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAGCTGCTTACCAGCAAAG 527 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||| ||||| | || | || ||||||||| |||||| ||||| || Sbjct 528 ATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTC 587 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | ||| || || | |||||||||||||| || || || || ||| Sbjct 588 TCAATGGTGTCTGATGGTTCGACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACA 647 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 648 AAGATCTGCAT 658 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| ||| ||| || || | || || | |||||||||||| || Sbjct 696 TCTTTCTGGATGTTGTAGTCACTCAGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAG 755 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| |||||||| || | || | | ||||||||| |||||| ||||| || Sbjct 756 ATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTC 815 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | ||| || || | |||||||||||||| || || || || ||| Sbjct 816 TCAATAGTGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACA 875 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 876 AAGATCTGCAT 886 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| ||| ||| || || | || || | |||||||||||| || Sbjct 924 TCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAG 983 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||| ||||| | || | | || |||||| ||||||| ||||| || Sbjct 984 ATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTGGATTTTTGCTTTGACGTTC 1043 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | ||| || || | |||||||||||||| || || || || ||| Sbjct 1044 TCAATGGTGTCTGATGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACA 1103 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 1104 AAGATCTGCAT 1114 >seq482 Length=1421644 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| Sbjct 470025 AAAATTACCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 469966 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||| |||||| Sbjct 469965 CACCACTATACTATCGAGGA 469946 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| || | |||||| |||||| ||||| |||||||||||||||| |||| Sbjct 480956 AAAAATAGCCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 480897 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||| ||||||||| Sbjct 480896 TTACCACTATACTATCGAGGATTG 480873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| || | |||||| |||||| ||||| |||||||||||||||| |||| Sbjct 757573 AAAAAATTCCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 757632 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 757633 TTACCACTATACTATCGAGGAT 757654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 456059 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 456000 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 455999 TACTATCGAGGATTG 455985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 460494 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 460435 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 460434 TACTATCGAGGAT 460422 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||||||||||| Sbjct 458184 CTCCCCGCCGGGGAATTGAACCCCAGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 458125 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 458124 TACTATCGAGGA 458113 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 465622 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 465563 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 465562 TACTATCGAGGA 465551 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 470920 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 470861 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 470860 TACTATCGAGGA 470849 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| || | |||||| |||||| ||||| ||||| |||||||||| ||||| Sbjct 759803 AAAAAATACTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGCGACAGGCGGAGATACT 759744 Query 60118 CACCACTATACTACCGAGGATT 60139 |||||||||||| |||||||| Sbjct 759743 TACCACTATACTATCGAGGATT 759722 >seq14741 Length=58837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| || | |||||| |||||| ||||| |||||||||||||||| |||| Sbjct 32000 AAAAATAGCCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 32059 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||| ||||||||| Sbjct 32060 TTACCACTATACTATCGAGGATTG 32083 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| || | |||||| |||||| ||||| |||||||||||||||| |||| Sbjct 46279 AAAAAGAATCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 46338 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 46339 TCACCACTATACTATCGAGGA 46359 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||| |||||||||||||||| |||||||||||| Sbjct 54457 TCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACT 54516 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 54517 ATACTATCGAGGA 54529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||||| |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| Sbjct 42970 AAAATTACCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 43029 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 43030 TACCACTATACTATCGAGGA 43049 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 52914 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 52973 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 52974 TACTATCGAGGA 52985 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 56577 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 56636 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 56637 TACTATCGAGGATTG 56651 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 42043 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 42102 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 42103 TACTATCGAGGA 42114 >seq4354 Length=768200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| Sbjct 274680 AAAATAACCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 274739 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||| |||||| Sbjct 274740 CACCACTATACTATCGAGGA 274759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 289320 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 289379 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 289380 TACTATCGAGGA 289391 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 291194 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 291253 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 291254 TACTATCGAGGA 291265 >seq85835 Length=1634 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 1485 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 1426 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1425 TACTATCGAGGA 1414 >seq63917 Length=2738 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 1770 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 1711 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1710 TACTATCGAGGA 1699 >seq40372 Length=1401 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 790 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 731 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 730 TACTATCGAGGA 719 >seq6376 Length=515129 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 403591 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 403650 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 403651 TACTATCGAGGA 403662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570257574371400