Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq439 89.7 8e-13 seq2045 87.8 3e-12 seq20337 84.2 3e-11 seq3520 84.2 3e-11 >seq439 Length=1034337 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 |||||| || ||||| ||||| | | ||| |||||||||||||| ||||| |||||||| Sbjct 27986 TATATTGTAGTCTGACAGAGTGCGTCCATCTTCTAATTGTTTTCCTGCAAAGATCAATCT 27927 Query 146155 TTGCTGATCCGGAGGAATTCCT 146176 ||| ||||| || ||||||||| Sbjct 27926 TTGTTGATCTGGTGGAATTCCT 27905 >seq2045 Length=971168 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | || ||||| | |||||||||||| || || || ||||| Sbjct 725436 CCACCACGAAGTCTGAGCACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAT 725495 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | |||||||| ||||||||||| || |||||||| || || Sbjct 725496 AGAGTACGTCCATCTTCAAGCTGTTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGG 725555 Query 146171 ATTCCT 146176 || ||| Sbjct 725556 ATACCT 725561 >seq20337 Length=47830 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24031 TAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCAT 24090 || |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||| Sbjct 13134 TATTCACATTTTGGAAACCATCTTGCGTGTTCAGTCCAAGGTTCATCTGCTGGTTCCCAA 13193 Query 24091 TTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATC 24131 || | | ||||||||||||| |||||| || || || || Sbjct 13194 TTTCTAAGTCCACCATCACAATGAAAGCACTTGACGTTGTC 13234 >seq3520 Length=315575 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24031 TAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCAT 24090 || |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||| Sbjct 291299 TATTCACATTTTGGAAACCATCTTGCGTGTTCAGTCCAAGGTTCATCTGCTGGTTCCCAA 291358 Query 24091 TTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATC 24131 || | | ||||||||||||| |||||| || || || || Sbjct 291359 TTTCTAAGTCCACCATCACAATGAAAGCACTTGACATTGTC 291399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741497920569600