Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5956 93.3 4e-14 seq190700 84.2 2e-11 >seq5956 Length=223572 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 133801 CCTTCTAGAAGAGGAGACCTTGAAATTTTAGGATATTGTATGATAAAGTGGATGAGTGGT 133860 ||||| || || || || ||||||||||||| || ||||| | ||||| || ||||| Sbjct 129790 CCTTCAAGGAGGGGTGATATTGAAATTTTAGGGTACTGTATTCTTCAGTGGTTGTGTGGT 129731 Query 133861 AAATTACCATGGGAGGACGATTTAAAAAATAAAGAATATGTTAAAA 133906 | |||||||||||| ||| || | || | |||||||||||||||| Sbjct 129730 AGATTACCATGGGAAGACAATCTTGAAGACAAAGAATATGTTAAAA 129685 >seq190700 Length=4627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || | || ||||| || || ||||| || Sbjct 1643 TCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCTTC 1702 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || | |||||||| ||||||||||| || || |||||||| |||||||| Sbjct 1703 AACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATGCC 1762 Query 16379 ACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgct 16438 || | || ||||| || | ||| | | | |||||| | ||||| | ||| Sbjct 1763 ACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTGCC 1822 Query 16439 ttttgtttAACAC-AGTTCATGTTCTCTATTGCATTAAATAAATA 16482 || | || |||| || | | | |||| |||||||| || | ||| Sbjct 1823 TTCTTCTTCACACAAGGTAAAG-TCTCAATTGCATTGAACAGATA 1866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461250180543000