Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq190700 118 1e-21 seq213 86.0 6e-12 >seq190700 Length=4627 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || |||||||| || || || || || || ||||| | || ||||| | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||| || |||| || |||||||| |||||||| |||||||||||||||||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTT 14373 | | | ||||| ||| | |||| || Sbjct 1761 CCACGATGCGTTCACCATAACATGCATT 1788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| ||||| ||||||| |||||| || ||||||||||| || || ||| Sbjct 611 GACATGACACCCATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCT 670 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| || || ||||| || |||||||| ||| Sbjct 671 TCCAGTGAAATGTTCTCCATGAAGTCAAATGGGTTT 706 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/108 (80%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 |||||||| |||||||| || || ||||||||||| || |||||||| || || || || Sbjct 2322 ATGTATGTGTCAATAAGCAAACTGTACATTTCAGAATGGATGTTTTCTATTGCAATTTGG 2381 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAGTAAAA 14580 |||||||| ||||| | ||||||| ||| |||| |||| ||||| Sbjct 2382 AAACCATAGAAACAACGTGCTTCTGTTACTTGCACCTCCTGACTAAAA 2429 >seq213 Length=780240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/119 (78%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 14519 TCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCT-GAG 14575 ||||||||||||||||| ||||| || ||||| || || | ||| || | |||| ||| Sbjct 603137 TCCATAGCTATCTGAAACCCATAGAAGCATCTTGCCTCGGCAACC--TGGATCTCTTGAG 603194 Query 14576 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14634 | || ||| | ||| |||||| |||| ||||||||||| || ||||| |||||||| Sbjct 603195 TGAA-TCTCTGTACCAGGTTTTCAATAACAATACCATCACTGGCCGCAAAGAATGCCAA 603252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481029670763400