Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq190700 150 2e-31 seq67374 134 1e-26 seq1679 93.3 4e-14 >seq190700 Length=4627 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| | ||| || || | | |||||||| ||||| |||||||||| Sbjct 2898 GATGAACCACTACTCAGAGAAAACCCAAGGCGTTTTGTCATATTTCCAATTGAATATCAT 2839 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | ||||||||||| || ||||| || |||||||| | || |||||||| Sbjct 2838 GATATCTGGCAGATGTACAAAAAAGCGGAAGCGTCATTTTGGACGGCTGAGGAAGTAGAT 2779 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 |||| ||||| ||| | ||||||| ||| ||||| ||| || |||||||| | Sbjct 2778 TTGTCAAAGGACTTGATCCATTGGGAAGGCCTGAAAGATGATGAAAGGCATTTTATTTCA 2719 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || || ||||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 2718 CATGTATTGGCTTTTTTTGCTGCAAGTGATGGCATTGTCAATGAAAACTTGGT 2666 >seq67374 Length=1687 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || |||||||| |||||| | || |||||||| || Sbjct 886 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCATCA 827 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | ||| |||||||||||| | || || || ||| Sbjct 826 GACACTATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 767 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| || |||| || || ||| Sbjct 766 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACACTGAGTGACTACAAC 707 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| |||||||| ||||||| Sbjct 706 ATCCAGAAAGAATCTACTCTTCACTTGGTACT 675 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || |||||||| ||||| | || || ||||| || Sbjct 658 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCA 599 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||||||||||| | || || ||||| Sbjct 598 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 539 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| ||||||| | || |||| || || ||| Sbjct 538 CAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTACAAC 479 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| |||||||| ||||||| Sbjct 478 ATCCAGAAAGAATCTACTCTTCACTTGGTACT 447 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || |||||||| ||||| | || |||||||| || Sbjct 1114 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCA 1055 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||| ||||| | || || ||||| Sbjct 1054 GACACCATTGAGAACGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAA 995 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| | || |||| || || ||| Sbjct 994 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAAC 935 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| |||||||| ||||||| Sbjct 934 ATCCAGAAAGAATCTACTCTTCACTTGGTACT 903 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||| || |||||| | || |||||||| || Sbjct 1342 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCA 1283 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| |||||| ||||| | || || ||||| Sbjct 1282 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAA 1223 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| | || |||| || || ||| Sbjct 1222 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAAC 1163 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || |||||||| ||||||| Sbjct 1162 ATCCAGAAAGAGTCTACTCTTCACTTGGTACT 1131 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | || || || ||||||||||| || || || ||||||||| ||||| Sbjct 224 GACAAGGAAGGTATCCCTCCAGATCAGCAGCGTCTCATCTTTGCCGGCAAACAGCTGGAA 165 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | || |||| || || ||||| || |||||||| |||||||| ||||||| Sbjct 164 GATGGTCGTACACTGAGTGACTACAACATCCAGAAAGAATCTACTCTTCACTTGGTACT 106 >seq1679 Length=151814 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 |||| || |||||||||||||| || ||||| ||||| || || |||| || ||||| Sbjct 45897 TGTATTCCACAATTTCGGTACAGAGGTTGCTGCACTTGATAGTTCCCAGGTTCTGCTGGT 45838 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 | ||| | ||||| | ||||||||| ||||| ||||| |||||||| || ||| | Sbjct 45837 TTGATTTCCTGTTGCAGGCATCCTTGTAAAGCATATACGGAGTGCCCGTTTCAGTCTGAG 45778 Query 23184 ACTCGATGATCGCTCGCCACA 23204 || ||||| || ||||| Sbjct 45777 CTTCAATGATGGCATACCACA 45757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444550265679600