Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq190700 131 2e-25 seq1679 127 3e-24 >seq190700 Length=4627 Score = 131 bits (144), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || || | || ||||| || ||||| || | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || || || || |||||||| |||||||||||||| || ||||||||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGG 33780 | | | | || ||||||| || ||||| | |||||| | | ||||| || | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTG 1820 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||| || |||||||| | || || || ||||| || ||||| Sbjct 1821 CCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATA 1866 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || || |||||||| || |||||||| |||||||||||| |||||| Sbjct 2669 AAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAA 2728 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | |||| || | | || | ||||| | | || || || | ||| ||||| Sbjct 2729 TGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTTCC 2788 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || | ||||||||||| || || || ||||| ||||| | |||||| |||||||||| Sbjct 2789 TCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCA 2848 Query 34146 ATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||||| || || ||||| | |||| ||| Sbjct 2849 ATTGGAAATATGACAAAACGCCTTGGGTTT 2878 Score = 100 bits (110), Expect = 4e-16 Identities = 109/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCC 33286 |||| ||||||||||| |||||| | ||| | | ||||| || ||||| || || Sbjct 562 GTTTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACC 621 Query 33287 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33346 ||| |||||||||||||| || | || || || || || || |||||||||| ||| || Sbjct 622 CATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAAT 681 Query 33347 ATTTTCCATGAAATCAAACGGATT 33370 || |||||||| ||||| || || Sbjct 682 GTTCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| ||||| |||||||| |||| || || | || || |||| ||||||||||||| Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| ||| || ||| ||| || ||||| ||||| || |||||||| || || ||| | Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGC-ATAGA 43313 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | || || || | ||| || || || ||||| |||||||| || ||| ||||| | | Sbjct 43312 AGAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAA 43253 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || || | |||||| ||||||| ||| || || | ||||||| || Sbjct 43252 AGATGTCCGCATGCCAGGGTTCCAGGTAAATTGCAAATGCTCCAGGGCG 43204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628099339496400