Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq190700 102 8e-17 >seq190700 Length=4627 Score = 102 bits (112), Expect = 8e-17 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 11642 CAATGTAAACCT---TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATC 11698 |||||| ||| | || ||||| || || |||||||| || || || || || ||||| Sbjct 1628 CAATGTGAACTTACCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATG 1687 Query 11699 AATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCC 11758 | || ||||| || | ||| || || | |||||||| ||||||||||| |||||||| Sbjct 1688 AGACCACGTTTCTTCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCA 1747 Query 11759 ACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 || || |||||||| || | | ||| ||||| Sbjct 1748 ACTGCAGCAAATGCCACGATGCGTTCACCATA 1779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 || || ||||| ||||| |||||||| | |||||||| || | || |||| ||||| Sbjct 2669 AAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAA 2728 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATC-ATCTAAATCTTTTGATAAATCTACTTC 12132 | |||| || | | | ||||||| ||| || || ||||| ||||||||||| Sbjct 2729 TGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATC-AAGTCCTTTGACAAATCTACTTC 2787 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 ||| | |||||||| || | | || ||| ||||| | ||||||||||||||| | Sbjct 2788 CTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTC 2847 Query 12193 AATAGGGAAAATAACGAA 12210 ||| || || || || || Sbjct 2848 AATTGGAAATATGACAAA 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467246576497200