Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq190700 145 1e-29 seq1679 127 3e-24 >seq190700 Length=4627 Score = 145 bits (160), Expect = 1e-29 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 36180 ccTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || || | || ||||| || ||||| || | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || || || |||||||||||||||||||| ||||| || ||||| ||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGG 36356 | | | | || ||||||| ||| ||||| | |||||| | | ||||| || | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTG 1820 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||| || |||||||| | ||||| || ||||| || ||||| Sbjct 1821 CCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATA 1866 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 || |||||||| || || || ||||| || |||||||| |||||||||||| |||||| Sbjct 2669 AAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAA 2728 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | |||| | | | || | ||||| | | || || || | ||| ||||| Sbjct 2729 TGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTTCC 2788 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || | ||||||||||| || || || ||||| ||||| | |||||| |||||||||| | Sbjct 2789 TCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCA 2848 Query 36722 ATTGGAAAAATAACAAA 36738 |||||||| || ||||| Sbjct 2849 ATTGGAAATATGACAAA 2865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 35806 GTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCC 35862 |||| ||||||| ||| ||||||| | ||| | | ||||| || ||||| || || Sbjct 562 GTTTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACC 621 Query 35863 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATAT 35922 ||| |||||||||||||| || | || || || || || || || ||||| | ||| || Sbjct 622 CATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAAT 681 Query 35923 ATTTTCCATGAAATCGAATGGATT 35946 || |||||||| || ||||| || Sbjct 682 GTTCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| ||||| |||||||| |||| || || || || || |||| ||||||||||||| Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 66099 ||| ||| || ||| ||| || ||||| ||||| || |||||||| || || ||| | Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGC-ATAGA 43313 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | | || |||| ||| || || || ||||| |||||||| || ||| ||||| | | Sbjct 43312 AGAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAA 43253 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || || |||||| ||||||| ||| || || | ||||||| || Sbjct 43252 AGATGTCCGCATGCCAGGGTTCCAGGTAAATTGCAAATGCTCCAGGGCG 43204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656377181194200