Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq190700 145 1e-29 seq1679 122 1e-22 >seq190700 Length=4627 Score = 145 bits (160), Expect = 1e-29 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || || | || ||||| || ||||| || | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || || |||||||| ||||||||||||||||| || ||||| ||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGG 50158 | || | | || ||||||| || ||||| | |||||| | | ||||| || | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTG 1820 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||||| || |||||||| | || || || ||||| || ||||| Sbjct 1821 CCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATA 1866 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 || |||||||| || || || ||||| || |||||||| |||||||||||| |||||| Sbjct 2669 AAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAA 2728 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 || |||| | | | || | ||||| | | || || || | ||||||||| Sbjct 2729 TGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTTCC 2788 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || | ||||||||||| || || || ||||| ||||| | |||||| |||||||||| Sbjct 2789 TCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCA 2848 Query 50524 ATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||||| || || ||||| | |||| ||| Sbjct 2849 ATTGGAAATATGACAAAACGCCTTGGGTTT 2878 Score = 109 bits (120), Expect = 8e-19 Identities = 111/144 (77%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 49608 GTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCC 49664 |||| ||||||||||| ||||||| | ||| | | |||||| || ||||| || || Sbjct 562 GTTTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACC 621 Query 49665 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 49724 ||| |||||||||||||| || | || || || || || || |||||||||| ||| || Sbjct 622 CATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAAT 681 Query 49725 ATTTTCCATGAAATCAAACGGATT 49748 || |||||||| ||||| || || Sbjct 682 GTTCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| ||||| |||||||| ||||||| | || || || || | ||||||||||||| Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978 ||| ||| | ||| || || ||||| ||||| || |||||||| || || ||| | Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGC-ATAGA 43313 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 | || || |||| ||| ||||| || ||||| |||||||| || ||| ||||| | | Sbjct 43312 AGAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAA 43253 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || || | |||||| ||||||| ||| || || Sbjct 43252 AGATGTCCGCATGCCAGGGTTCCAGGTAAATTGC 43219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716309228038200