Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq190700 120 3e-22 seq213 82.4 7e-11 >seq190700 Length=4627 Score = 120 bits (132), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || || || || || || ||||| | || ||||| | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || |||| |||||||| || |||||||| |||||||||||||||||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTT---TGTTCGATATCCATTTTCTAGCCCATT 14070 | | | ||||| ||| | |||| || | ||| |||||| | ||||| | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTT---TATCCAACTGAGTGCCCAGT 1817 Query 14071 CAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 | | || || || | | || | || ||||| ||||| || | ||||||| Sbjct 1818 CTGCCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATATTCC 1870 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| ||||| ||||||| |||||| || ||||||||||| || || ||| Sbjct 611 GACATGACACCCATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCT 670 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| || || ||||| || |||||||| ||| Sbjct 671 TCCAGTGAAATGTTCTCCATGAAGTCAAATGGGTTT 706 >seq213 Length=780240 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 14187 TCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG-ACCATTGTACTTCCGAGTA 14245 ||||||||||||||||| ||||| |||||||| || || | | | | | || |||| Sbjct 603137 TCCATAGCTATCTGAAACCCATAGAAGCATCTTGCCTCGGCAACCTGGATCTCTTGAGTG 603196 Query 14246 AAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14302 || ||| | ||| |||||| |||| ||||||||||| || ||||| |||||||| Sbjct 603197 AA-TCTCTGTACCAGGTTTTCAATAACAATACCATCACTGGCCGCAAAGAATGCCAA 603252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478419212067000