Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq190700 120 3e-22 seq213 89.7 5e-13 >seq190700 Length=4627 Score = 120 bits (132), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || || || || || || ||||| | || ||||| | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || |||| || |||||||| |||||||| |||||||||||||||||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTT---TGTTTGATATCCATTTTCTAGCCCATT 13858 | | | ||||| ||| | |||| || | ||| |||||| | ||||| | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTT---TATCCAACTGAGTGCCCAGT 1817 Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC 13911 | | || || || | | || | || || ||||||||||| | || |||| Sbjct 1818 CTGCCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATATTCC 1870 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||||||||||||| ||||| |||||||| || |||||||| ||||||| | | ||||| Sbjct 2667 CCAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAA 2726 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 | | || |||| || || || ||||| | || ||||| || | |||||||| Sbjct 2727 AATGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTT 2786 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | |||||||| || | |||||||| ||||| ||| || || | |||| Sbjct 2787 CCTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATT 2846 Query 14225 ATATAGGAAAAACTACAAA 14243 || ||||| | ||||| Sbjct 2847 CAATTGGAAATATGACAAA 2865 Score = 96.9 bits (106), Expect = 3e-15 Identities = 87/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 |||||||| |||||||| || || ||||||||||| || ||||||||||| || || || Sbjct 2322 ATGTATGTGTCAATAAGCAAACTGTACATTTCAGAATGGATGTTTTCTATTGCAATTTGG 2381 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAA 14036 |||||||| ||||| | ||||||| ||| |||||| || ||||| Sbjct 2382 AAACCATAGAAACAACGTGCTTCTGTTACTTGCACCTCCTGACTAAAA 2429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| ||||| ||||||| |||||| || ||||| ||||| || || ||| Sbjct 611 GACATGACACCCATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCT 670 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| || || ||||| || || ||||| ||| Sbjct 671 TCCAGTGAAATGTTCTCCATGAAGTCAAATGGGTTT 706 >seq213 Length=780240 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/119 (79%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 13975 TCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCC-GAG 14031 || |||||||||||||| ||||| || ||||| || || | ||| || | ||| ||| Sbjct 603137 TCCATAGCTATCTGAAACCCATAGAAGCATCTTGCCTCGGCAACC--TGGATCTCTTGAG 603194 Query 14032 TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | || ||| | | ||| ||||||| |||||||||||||||| || ||||| |||||||| Sbjct 603195 TGAA-TCTCTGTACCAGGTTTTCAATAACAATACCATCACTGGCCGCAAAGAATGCCAA 603252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477283120018200