Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq190700 149 8e-31 seq1679 113 6e-20 >seq190700 Length=4627 Score = 149 bits (164), Expect = 8e-31 Identities = 169/226 (75%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| ||||| || || | || ||||| || ||||| || | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || || |||||||||||||||||||||||||| || ||||| ||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGG 42263 | | | | || ||||||| ||| ||||| | |||||| | | ||||| || | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTG 1820 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| || |||||||| | || || || ||||| || ||||| Sbjct 1821 CCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATA 1866 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 || ||||| || || || || ||||| || |||||||| |||||||||||| |||||| Sbjct 2669 AAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAA 2728 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | |||| || | | | | ||||| | | || || || | ||||||||| Sbjct 2729 TGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTTCC 2788 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 || ||||||||||||| ||||| || ||||| ||||| | ||||||||||||||||| | Sbjct 2789 TCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCA 2848 Query 42629 ATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| || || ||||| | |||| ||| Sbjct 2849 ATTGGAAATATGACAAAACGCCTTGGGTTT 2878 Score = 105 bits (116), Expect = 9e-18 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 41713 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCC 41769 |||| ||||||||||| |||||| | ||| | | ||||| || ||||| || || Sbjct 562 GTTTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACC 621 Query 41770 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATAT 41829 ||| |||||||||||||| || | || || || || || ||||||||||||| ||| || Sbjct 622 CATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAAT 681 Query 41830 ATTTTCCATGAAATCAAACGGATT 41853 || |||||||| ||||| || || Sbjct 682 GTTCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 113 bits (124), Expect = 6e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| ||||| |||||||| ||| || | || || || ||||| ||||||||||| | Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| ||| | | | || || ||||| ||||| || |||||||| || || ||| | Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGC-ATAGA 43313 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | || || |||| ||| ||||| || ||||| |||||||| || ||| ||||| | | Sbjct 43312 AGAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAA 43253 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 || || | |||||| ||||||| ||| || || Sbjct 43252 AGATGTCCGCATGCCAGGGTTCCAGGTAAATTGC 43219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669308206423800