Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq67374 165 2e-35 seq30926 105 2e-17 seq190700 100 7e-16 seq2045 98.7 2e-15 >seq67374 Length=1687 Score = 165 bits (182), Expect = 2e-35 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || ||||||||| || || | ||| || || || || || ||| Sbjct 1374 GTAGATTCTTTCTGGATGTTATAGTCACTCAGTGTACGACCATCCTCCAGCTGCTTGCCA 1433 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 1434 GCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCCTGGATTTTTGCTTTG 1493 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||||| ||||| || || || ||||| ||||| || ||| Sbjct 1494 ACATTTTCAATGGTGTCTGATGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTT 1553 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| ||||||||| || Sbjct 1554 TTGACAAAGATCTGCATTATG 1574 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || |||||| || || | ||| ||||| || || || ||| Sbjct 462 GTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAGCTGCTTACCA 521 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| || ||||| || ||||| || ||||| || || ||||| Sbjct 522 GCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTG 581 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || ||||| ||||| || || || || || ||||| || ||| Sbjct 582 ACGTTCTCAATGGTGTCTGATGGTTCGACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTT 641 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 642 TTGACAAAGATCTGCAT 658 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || |||||| || || | ||| ||||| | || || ||| Sbjct 918 GTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAACTGCTTACCA 977 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| || || || || |||||||| ||||| || |||||||| Sbjct 978 GCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTGGATTTTTGCTTTG 1037 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || ||||| ||||| || || || || || ||||| || ||| Sbjct 1038 ACGTTCTCAATGGTGTCTGATGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTT 1097 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1098 TTGACAAAGATCTGCAT 1114 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||||| | || | |||||||||||||| || || |||||| Sbjct 657 ATACCACCTCGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 716 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || | || ||||| | || || |||||||| || || | ||| ||||| ||| Sbjct 717 CTCAGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGA 776 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || | || || ||||| Sbjct 777 GGGATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCA 836 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || ||||| ||||| |||||||| Sbjct 837 ACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || |||||| || || | ||| ||||| || ||||| || Sbjct 121 GTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAGCTGTTTGCCG 180 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| || ||||| || || || || |||||||| Sbjct 181 GCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCTTGGATTTTTGCTTTG 240 Query 104483 ACATTTTCTACGGT 104496 || || || | ||| Sbjct 241 ACGTTCTCAATGGT 254 >seq30926 Length=14648 Score = 105 bits (116), Expect = 2e-17 Identities = 129/172 (75%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 238605 CAGATACAAATGGTAAGACTAGGCAAAATGCATAG-TTTCTTACGAATGTATTGGGCTAA 238663 |||||||||||||| | ||||||||||||| | ||||| | | ||||| ||||| || Sbjct 554 CAGATACAAATGGTCAATGAAGGCAAAATGCATGGATTTCTGA-GGATGTACTGGGCCAA 496 Query 238664 AAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAA 238723 |||||||| |||||||| ||| || || | ||||| || | || ||||| || Sbjct 495 GAAGATACTGGAATGGACAGAATCACCGGAGCAGGCTCTGGAATTTGCCATCTATCTCAA 436 Query 238724 CGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTT-GTAT 238774 |||||||| ||||| || |||| ||||| || || || || |||| |||| Sbjct 435 TGATAAATATGAACTGGATGGTAGAGATCCCAATGGCTATGTTGGTTAGTAT 384 >seq190700 Length=4627 Score = 100 bits (110), Expect = 7e-16 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC---GATAGCGCGCCTTAC 269125 ||||||| || || | || ||||| || | ||||||||| || | || ||| Sbjct 1836 TGTGTGAAGAAGAAGGCAGACTGGGCACTCAGTTGGATAAACTCTGACAATGCATGTTAT 1777 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||| | | || || ||||| || || || || || |||||||| || || ||||| Sbjct 1776 GGTGAACGCATCGTGGCATTTGCTGCAGTTGAGGGAATCTTCTTTTCTGGATCATTTGCA 1717 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | ||||| |||||||||||| | || || ||||| || || |||||||| || ||| | Sbjct 1716 TCAATCTTCTGGTTGAAGAAACGTGGTCTCATGCCTGGCTTGACTTTCTCCAATGAACTT 1657 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 1656 ATCAGCAGAGATGA 1643 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||||||| | || |||||| ||| |||||||||| | || | || Sbjct 2865 TTTGTCATATTTCCAATTGAATATCATGATATCTGGCAGATGTACAAAAAAGCGGAAGCG 2806 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || |||||||| | || ||||||||| |||| | ||||| || ||||| || | Sbjct 2805 TCATTTTGGACGGCTGAGGAAGTAGATTTGTCAAAGGACTTGATCCATTGGGAAGGCCTG 2746 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 ||| || ||||| ||||| || || | | || |||||||| | |||||||| Sbjct 2745 AAAGATGATGAAAGGCATTTTATTTCACATGTATTGGCTTTTTTTGCTGCAAGTGATGGC 2686 Query 268883 ATCGTTAACGAAAA 268896 || || || ||||| Sbjct 2685 ATTGTCAATGAAAA 2672 >seq2045 Length=971168 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || |||| ||| | |||||||||||||| || || ||||| |||||||| | Sbjct 725445 AGTCTGAGCACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGTACGT 725504 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || ||||| || |||||||| |||||||| | |||||| ||||| || || || ||| Sbjct 725505 CCATCTTCAAGCTGTTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGGATACCT 725561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148178638509540