Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4629 87.8 9e-13 seq38326 84.2 1e-11 seq7333 84.2 1e-11 seq165812 82.4 4e-11 seq141627 82.4 4e-11 seq12056 82.4 4e-11 seq9398 82.4 4e-11 seq2539 82.4 4e-11 >seq4629 Length=84191 Score = 87.8 bits (96), Expect = 9e-13 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 || || |||||||| | || | ||||| | || ||||||| |||| |||||||| Sbjct 54311 TAAAAGTAATAAAAGTTAAACTCTGGCCAGTACGGGGGTCGAACCCGCGACATTCGCGTT 54252 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| |||||||||||||| |||||| || Sbjct 54251 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCCGTTGA 54210 >seq38326 Length=56097 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 26782 GGTTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 26723 Query 11528 CCG 11530 ||| Sbjct 26722 CCG 26720 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 28412 GGCTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 28353 Query 11528 CC 11529 || Sbjct 28352 CC 28351 >seq7333 Length=581548 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 66536 GGCTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 66595 Query 11528 CCG 11530 ||| Sbjct 66596 CCG 66598 >seq165812 Length=1726 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 1162 GGCTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 1221 Query 11528 CC 11529 || Sbjct 1222 CC 1223 >seq141627 Length=1430 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| ||| |||||||||| || Sbjct 1283 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCGACTGAGCTAACCGG 1342 Query 11528 CCGTCGA 11534 || |||| Sbjct 1343 CCATCGA 1349 >seq12056 Length=154090 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 32281 GGTTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 32222 Query 11528 CC 11529 || Sbjct 32221 CC 32220 >seq9398 Length=301907 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 138173 GGTTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 138232 Query 11528 CC 11529 || Sbjct 138233 CC 138234 >seq2539 Length=651804 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 239060 GGCTCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 239001 Query 11528 CC 11529 || Sbjct 239000 CC 238999 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260795637902380