Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq67374 168 6e-37 seq439 84.2 2e-11 >seq67374 Length=1687 Score = 168 bits (186), Expect = 6e-37 Identities = 165/211 (78%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||| || || | |||||| || |||| |||| || ||||| Sbjct 1362 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTATAGTCACTCA--GTGTACGACCATCCT 1419 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || || ||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 1420 CCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCCT 1479 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||||| ||||| | | ||||| | | ||||| |||| |||||||| | Sbjct 1480 GGATTTTTGCTTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCAAGGGTGATGGTCT 1539 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||||| |||||||||||||| Sbjct 1540 TGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1570 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||| || || | ||| || || |||| || | ||| ||| Sbjct 678 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGGCCATCTTCC 737 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || ||||||| | | |||||||||||||| |||||||| ||||| | Sbjct 738 AACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGG 797 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || ||||| | | |||||| | | || || |||| ||||||||||| Sbjct 798 ATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTG 857 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| |||||||||||||| Sbjct 858 CCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||| || || | ||| || || |||| |||| || ||| | Sbjct 450 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCA--GTGTACGACCATCTT 507 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || || ||||||| | | || || |||||||| || ||||| ||||| | Sbjct 508 CCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCT 567 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| || |||||| | | ||||| | | ||||| || | |||||||||| Sbjct 568 GGATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCGACCTCCAGAGTGATGGTTT 627 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||||| |||||||||||||| Sbjct 628 TGCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||| || || | ||| || || |||| |||| || ||| | Sbjct 906 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCA--GTGTACGACCATCTT 963 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| || || ||||||| | | || || ||||| || |||||||||||||| | Sbjct 964 CCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCT 1023 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||||| |||||| | | ||||| | | || || || | |||||||||| Sbjct 1024 GGATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCAACCTCCAGAGTGATGGTTT 1083 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||||| |||||||||||||| Sbjct 1084 TGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||| || || || | ||| || || |||| |||| || ||| | Sbjct 1134 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCA--GTGTACGACCATCTT 1191 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| || || ||||||| | | || || ||||| || |||||||||||||| | Sbjct 1192 CCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCT 1251 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||||||||| || | | ||||| | | || || |||| |||||||| | Sbjct 1252 GGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAACCTCAAGGGTGATGGTCT 1311 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||||| || ||||||||||| Sbjct 1312 TGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 Score = 111 bits (122), Expect = 1e-19 Identities = 108/137 (79%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||| || || | ||| || || |||| |||| || ||| | Sbjct 109 ACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCA--GTGTACGACCATCTT 166 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||||||||| ||| ||||||| | | |||||||||||||| |||||||| ||||| | Sbjct 167 CCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCTT 226 Query 94917 AAATTTTTGCCTTGACG 94933 |||||||| |||||| Sbjct 227 GGATTTTTGCTTTGACG 243 >seq439 Length=1034337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGT 94961 ||||||||||||| | |||||||||||||| | | || |||| | | || || | Sbjct 25749 TACCTTCTTTGTCCTGGATTTTTGCCTTGACATTTTCTATGGTATCAGAGGGTTCAACCT 25690 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 ||| ||||||||||| ||||| || || |||||||| |||||||| |||| Sbjct 25689 CAAGAGTGATGGTTTTCCCAGTTAGGGTCTTCACAAAAATCTGCAT-CTTA 25640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447068177551800