Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq190700 129 6e-25 >seq190700 Length=4627 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 ||||||||||||| || || |||||||| || |||||||| ||||||| || | |||| Sbjct 2667 CCAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAA 2726 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 ||| | ||| | |||| | | || ||||| | || || ||||| |||||||||| Sbjct 2727 AATGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTT 2786 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATA 22040 | |||| |||||||| || || ||||| ||||| ||||||||||| |||| Sbjct 2787 CCTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATT 2846 Query 22041 TTATTGGAAATATTACAAA 22059 ||||||||||| ||||| Sbjct 2847 CAATTGGAAATATGACAAA 2865 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| || || || || || ||||| | || | || || Sbjct 1643 TCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCTTC 1702 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 ||||| || ||||| ||||||| ||| |||||||| || |||||||| ||||||||||| Sbjct 1703 AACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATGCC 1762 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAA---TATCCATTTTTCTGCCCATTTT 21676 || | |||||||| || | || | || || | |||||| | |||||| | | Sbjct 1763 ACGATGCGTTCACCATA---ACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCT 1819 Query 21677 GCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| | || | |||| | || ||||| || || || |||| Sbjct 1820 GCCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGAT 1865 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 ||| ||||||| |||||||||| | || | |||||| ||||||| | ||| Sbjct 563 TTTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACCC 622 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || ||||| || |||| |||||| || || || || |||||||||||||||| ||| || Sbjct 623 ATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAATG 682 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 ||||| || |||||||| ||||| Sbjct 683 TTCTCCATGAAGTCAAATGGGTTTTC 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530449674886200