Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq190700 145 9e-30 seq1679 136 5e-27 >seq190700 Length=4627 Score = 145 bits (160), Expect = 9e-30 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| ||||| || || | || ||||| || ||||| || | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || || || || ||||||||||||||||||||||| || ||||||||||| | Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGG 33502 | | | | || ||||||| || ||||| | |||||| | | ||||| || | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTG 1820 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||||| || |||||||| | || || || ||||| || ||||| Sbjct 1821 CCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATA 1866 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| || || || ||||| || |||||||| |||||||||||| |||| Sbjct 2667 CCAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAA 2726 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| |||| || | | || | ||||| | | || || || | |||||||| Sbjct 2727 AATGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTT 2786 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 | || | ||||||||||| || || || ||||| ||||| | |||||| |||| ||||| Sbjct 2787 CCTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATT 2846 Query 33866 GGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||||| || || ||||| | |||| ||| Sbjct 2847 CAATTGGAAATATGACAAAACGCCTTGGGTTT 2878 Score = 105 bits (116), Expect = 8e-18 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 32952 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 33008 |||| ||||||||||| |||||| | ||| | | |||||| || ||||| || || Sbjct 562 GTTTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACC 621 Query 33009 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33068 ||| |||||||||||||| || | || || || || || || |||||||||| ||| || Sbjct 622 CATCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAAT 681 Query 33069 ATTTTCCATGAAATCAAACGGATT 33092 || |||||||| ||||| || || Sbjct 682 GTTCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| ||||| |||||||| |||| || || || || || |||| ||||||||||||| Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||| ||| || ||| ||| || ||||| ||||| || |||||||| || || ||| | Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGC-ATAGA 43313 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | || || |||| ||| || || || ||||| |||||||| || ||| ||||| | | Sbjct 43312 AGAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAA 43253 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || || | |||||| ||||||| ||| || || | ||||||| || Sbjct 43252 AGATGTCCGCATGCCAGGGTTCCAGGTAAATTGCAAATGCTCCAGGGCG 43204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621247683235800