Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq67374 109 5e-19 >seq67374 Length=1687 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | ||||| ||||| | ||||| || | || ||| | || ||||| | Sbjct 1574 CATAATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAA-C 1516 Query 24047 CAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || | |||||||| || | |||||| ||| || ||||||||||| || ||||| | Sbjct 1515 CATCAGACACCATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCTCCAG 1456 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||| |||||| |||| | | |||||||| || || |||| | | | || || | Sbjct 1455 ATCAGCAGAGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACACTGAGTGACT 1396 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| || ||||||||||| |||| || || Sbjct 1395 ATAACATCCAGAAAGAATCTACTCTTCACTTGGT 1362 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || || | || ||||| ||| | Sbjct 658 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAA-CCATC 600 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | |||||| || || ||||| |||||||| ||||| || || Sbjct 599 AGACACCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 540 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | || || | | || ||||| || ||||||| | | | || || || || Sbjct 539 ACAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTACAA 480 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||||||||| |||| || || Sbjct 479 CATCCAGAAAGAATCTACTCTTCACTTGGT 450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || ||| | || || || ||| | Sbjct 886 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAA-CCATC 828 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | |||||| || || ||||| ||||| || ||||| ||||| Sbjct 827 AGACACTATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 768 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | || ||||| | ||||||| | | | | || || || || Sbjct 767 GCAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACACTGAGTGACTACAA 708 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||||||||| |||| || || Sbjct 707 CATCCAGAAAGAATCTACTCTTCACTTGGT 678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || || | || || || ||| | Sbjct 1114 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAA-CCATC 1056 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | |||||| ||| || ||||||||||| || || || || || Sbjct 1055 AGACACCATTGAGAACGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCA 996 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | || || | | || ||||| | ||||||| | | | || || || || Sbjct 995 ACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAA 936 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||||||||| |||| || || Sbjct 935 CATCCAGAAAGAATCTACTCTTCACTTGGT 906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428792377629525