Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq67374 113 4e-20 >seq67374 Length=1687 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| ||||||| | || || || | || Sbjct 1114 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCA 1055 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| ||| ||||||||| || ||||||||||| || ||||| || Sbjct 1054 GACACCATTGAGAACGTCA---AAGCAAAAATCCAG-GACAAAGAAGGTATCCCACCAGA 999 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| || || || || ||||||| ||| || || | || || Sbjct 998 CCAACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTA 939 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || |||||||| || || || || || || Sbjct 938 CAACATCCAGAAAGAATCTACTCTTCACTTGGTACT 903 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| | || || || | || Sbjct 1342 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCA 1283 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||||||| ||||||||||| || ||||| |||||| Sbjct 1282 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAA 1223 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || || ||||||| ||| || || | || ||||| Sbjct 1222 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAAC 1163 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || Sbjct 1162 ATCCAGAAAGAGTCTACTCTTCACTTGGTACT 1131 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| ||||||| | || || || | || Sbjct 658 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCA 599 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| ||| |||| |||| || ||||| ||||| || || || || Sbjct 598 GACACCATTGAGAACGTCA---AAGCCAAAATCCAG-GACAAGGAAGGCATCCCTCCAGA 543 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| || || || | ||||||| ||| || || | || || Sbjct 542 CCAACAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTA 483 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || |||||||| || || || || || || Sbjct 482 CAACATCCAGAAAGAATCTACTCTTCACTTGGTACT 447 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 ||||||||| || ||||| ||||| || || || || || ||||| | || |||||| Sbjct 238 AAGCAAAAATCCAA-GACAAGGAAGGTATCCCTCCAGATCAGCAGCGTCTCATCTTTGCC 180 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 |||||||| | ||||||| ||| || || | || ||||| || || |||||||| || Sbjct 179 GGCAAACAGCTGGAAGATGGTCGTACACTGAGTGACTACAACATCCAGAAAGAATCTACT 120 Query 25197 CTACATTTAGTGCT 25210 || || || || || Sbjct 119 CTTCACTTGGTACT 106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || || || ||||||| | || || || | || Sbjct 1571 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCATC 1512 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| ||||||||| || ||||||||||| || || || | Sbjct 1511 AGACACCATTGAAAATGTCA---AAGCAAAAATCCAG-GACAAAGAAGGTATCCCTCCAG 1456 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| | | || ||||| ||||| || | || |||| ||| || || | || | Sbjct 1455 ATCAGCAGAGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACACTGAGTGACT 1396 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || |||||||| || || || || || || Sbjct 1395 ATAACATCCAGAAAGAATCTACTCTTCACTTGGTTCT 1359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432175354967825