Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq190700 179 4e-40 >seq190700 Length=4627 Score = 179 bits (198), Expect = 4e-40 Identities = 172/218 (79%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || ||||| ||| |||||||||||||||| ||| |||||||| Sbjct 2672 TTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAATGC 2731 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGAT-AGATCTTTTGAAAGATCGACTTCTTC 93600 | ||||||||||| || ||||||| |||| | || ||||| | ||| ||||| || Sbjct 2732 CTTTCATCATCTTTCAGGCCTTCCCAAT-GGATCAAGTCCTTTGACAAATCTACTTCCTC 2790 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | |||||||| || ||||| |||||||||||||| | ||| || || ||||||| ||| Sbjct 2791 AGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCAAT 2850 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 |||||||||||||||||| | ||||| ||| | |||| Sbjct 2851 TGGAAATATGACAAAACGCCTTGGGTTTTCTCTGAGTA 2888 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||| || || || || | || || |||||||| | ||| || ||||| ||| Sbjct 1661 TCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCTTCAACCAGAAGATTGATGCA 1720 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || |||||||| || || || || || || ||||||||||| || ||||| || || Sbjct 1721 AATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATGCCACGATGCGTTCACCATAA 1780 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 ||| | | | | ||||| | | ||||| || || || ||||| | ||||||| Sbjct 1781 CATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTGCCTTCTTCTTCACACAAGGT 1840 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATC 93342 | || || || || || || || || || Sbjct 1841 AAAGTCTCAATTGCATTGAACAGATATTC 1869 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| || || | || | |||||||||||||||| || || |||||||||||| Sbjct 2322 ATGTATGTGTCAATAAGCAAACTGTACATTTCAGAATGGATGTTTTCTATTGCAATTTGG 2381 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || | ||||| || ||| ||| | ||| || Sbjct 2382 AAACCATAGAAACAACGTGCTTCTGTTACTTGCACCTCCTGACTAAAACGCTCAAC 2437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555341579326200