Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1679 113 8e-20 seq190700 91.5 3e-13 >seq1679 Length=151814 Score = 113 bits (124), Expect = 8e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 ||||| || |||| || || |||||| || ||||| | |||| || | | Sbjct 43418 CCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGTCCAGTCTTTGTTG 43359 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 ||| || | || ||||||||||||||| ||||| ||||| | |||||||||||||| Sbjct 43358 GCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGCATAGAAGAGGTCCCTGGCT 43299 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGC 245116 |||||||||||| ||||| |||||| | |||| || ||||||| ||| | ||| Sbjct 43298 CTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAAAGATGTCCGCATGC 43239 Query 245117 CAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 ||||| |||| ||| | || | || || || |||| || Sbjct 43238 CAGGGTTCCAGGTAAATTGCAAATGCTCCAGGGCGCTGGT 43199 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||| ||||| | || |||| | ||||| ||||| |||||||| ||||||||||| || Sbjct 45914 CACTTCCTCAGCACTGCTGTATTCCACAATTTCGGTACAGAGGTTGCTGCACTTGATAGT 45855 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 ||||||| ||| || || || || ||||||||| |||||||| ||||| Sbjct 45854 TCCCAGGTTCTGCTGGTTTGATTTCCTGTTGCAGGCATCCTTGTAAAGCAT 45804 >seq190700 Length=4627 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| | || || | ||||||||||| |||||||| |||| Sbjct 1863 CTGTTCAATGCAATTGAGACTTTACCTTGTGTGAAGAAGAAGGCAGACTGGGCACTCAGT 1804 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| | | | | ||| | || || | | || || ||| | || || ||| Sbjct 1803 TGGATAAACTCTGACAATGCATGTTATGGTGAACGCATCGTGGCATTTGCTGCAGTTGAG 1744 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GAT 42787 || |||||||| || || | || || || ||||||||| | ||| | | | ||| || Sbjct 1743 GGAATCTTCTTTTCTGGATCATTTGCATCAATCTTCTGGTTGAAG-AAACGTGGTCTCAT 1685 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || | || ||||| || ||||| |||||||| || |||| Sbjct 1684 GCCTGGCTTGACTTTCTCCAATGAACTTATCAGCAGAGATGAGG 1641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941762865598800