Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq25059 87.8 1e-12 seq70007 86.0 5e-12 seq25210 82.4 6e-11 >seq25059 Length=18017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||| |||| | | |||| |||||||| Sbjct 6175 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAGGGGCCACGATCAAAGGAACC 6116 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCG 115620 | ||||||| || ||||||||||| || ||| Sbjct 6115 ATAACTGATTTAATGAGCCATTCGCAGTTTCG 6084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||| |||| | | |||| |||||||| Sbjct 6175 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAGGGGCCACGATCAAAGGAACC 6116 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCG 114423 | ||||||| || ||||||||||| || ||| Sbjct 6115 ATAACTGATTTAATGAGCCATTCGCAGTTTCG 6084 >seq70007 Length=2599 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||| |||| | | |||| |||||||| Sbjct 1845 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAGGGTCAACGATCAAAGGAACC 1904 Query 114392 AAAACTGATATATTGAGCCATTCG 114415 | ||||||| || ||||||||||| Sbjct 1905 ATAACTGATTTAATGAGCCATTCG 1928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||| |||| | | |||| |||||||| Sbjct 1845 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAGGGTCAACGATCAAAGGAACC 1904 Query 115589 AAAACTGATATATTGAGCCATTCG 115612 | ||||||| || ||||||||||| Sbjct 1905 ATAACTGATTTAATGAGCCATTCG 1928 >seq25210 Length=2910 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||| ||| |||| | | |||| |||||||| Sbjct 981 CATGTATTAGCTCTAGAATTACCACAGTTACCCATGTAAGGGTCAACGATCAAAGGAACC 922 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCG 115620 | ||||||| || ||||||||||| || ||| Sbjct 921 ATAACTGATTTAATGAGCCATTCGCAGTTTCG 890 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||| ||| |||| | | |||| |||||||| Sbjct 981 CATGTATTAGCTCTAGAATTACCACAGTTACCCATGTAAGGGTCAACGATCAAAGGAACC 922 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCG 114423 | ||||||| || ||||||||||| || ||| Sbjct 921 ATAACTGATTTAATGAGCCATTCGCAGTTTCG 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396006220840510