Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq67374 105 7e-18 seq482 91.5 2e-13 seq14741 89.7 6e-13 seq4354 86.0 7e-12 >seq67374 Length=1687 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| ||| ||| || || | || || |||||||||||||| || Sbjct 468 TCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAGCTGCTTACCAGCAAAG 527 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||| ||||| | || | || ||||||||| |||||| ||||| || Sbjct 528 ATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTC 587 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | ||| || || | |||||||||||||| || || || || ||| Sbjct 588 TCAATGGTGTCTGATGGTTCGACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACA 647 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 648 AAGATCTGCAT 658 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| ||| ||| || || | || || | |||||||||||| || Sbjct 924 TCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAG 983 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||| ||||| | ||| | | || |||||| ||||||| ||||| || Sbjct 984 ATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTGGATTTTTGCTTTGACGTTC 1043 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | ||| || || | |||||||||||||| || || || || ||| Sbjct 1044 TCAATGGTGTCTGATGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACA 1103 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 1104 AAGATCTGCAT 1114 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| ||| ||| || || | || || | |||||||||||| || Sbjct 696 TCTTTCTGGATGTTGTAGTCACTCAGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAG 755 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| |||||||| || | || | | ||||||||| |||||| ||||| || Sbjct 756 ATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTC 815 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| | ||| || || | |||||||||||||| || || || || ||| Sbjct 816 TCAATAGTGTCTGATGGTTCAACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACA 875 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 876 AAGATCTGCAT 886 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| ||| ||| || || | || || | |||||||||||| || Sbjct 1151 CTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAA 1210 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||| ||||| | ||| | | || |||||| ||||||| || | | Sbjct 1211 GATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTGGATTTTTGCCTTAACATT 1270 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || || | |||||||| ||||| || || || || || Sbjct 1271 CTCAATGGTGTCTGATGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGAC 1330 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 1331 GAAGATCTGCAT 1342 >seq482 Length=1421644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| || | | ||| |||||| ||||| |||||||||||||||| ||||| Sbjct 470025 AAAATTACCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 469966 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| |||||| Sbjct 469965 CACCACTATACTATCGAGGA 469946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | ||| |||||| ||||| |||||||||||||||| |||| Sbjct 480956 AAAAATAGCCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 480897 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||| ||||||||| Sbjct 480896 TTACCACTATACTATCGAGGATTG 480873 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| || | | ||| |||||| ||||| |||||||||||||||| |||| Sbjct 757573 AAAAAATTCCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 757632 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||| ||||||| Sbjct 757633 TTACCACTATACTATCGAGGAT 757654 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 456059 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 456000 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 455999 TACTATCGAGGATTG 455985 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 460494 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 460435 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 460434 TACTATCGAGGAT 460422 >seq14741 Length=58837 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | ||| |||||| ||||| |||||||||||||||| |||| Sbjct 32000 AAAAATAGCCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 32059 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||| ||||||||| Sbjct 32060 TTACCACTATACTATCGAGGATTG 32083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| || | | ||| |||||| ||||| |||||||||||||||| |||| Sbjct 46279 AAAAAGAATCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 46338 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 46339 TCACCACTATACTATCGAGGA 46359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||| |||||||||||||||| |||||||||||| Sbjct 54457 TCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACT 54516 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 54517 ATACTATCGAGGA 54529 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||||| |||| || | | ||| |||||| ||||| |||||||||||||||| ||||| Sbjct 42970 AAAATTACCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 43029 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 43030 TACCACTATACTATCGAGGA 43049 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 52914 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 52973 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 52974 TACTATCGAGGA 52985 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 56577 CTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTTACCACTA 56636 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 56637 TACTATCGAGGATTG 56651 >seq4354 Length=768200 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| |||| || | | ||| |||||| ||||| |||||||||||||||| ||||| Sbjct 274680 AAAATAACCTCCCCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 274739 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||| |||||| Sbjct 274740 CACCACTATACTATCGAGGA 274759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541730813629200