Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq67374 98.7 9e-16 >seq67374 Length=1687 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| ||||| || || ||||| || | | Sbjct 660 CCACCTCGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTC 719 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| || ||||| |||| | ||||||||||| ||||| Sbjct 720 AGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGG 779 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| |||||| |||| | || | ||||| | || || Sbjct 780 ATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAACC 839 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 840 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| ||||| || || ||||| || | | Sbjct 91 CCACCACGCAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTC 150 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || |||||||| || || |||| | ||||||||||| ||||| Sbjct 151 AGTGTACGACCATCTTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGG 210 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || || |||||||| |||||| ||||| Sbjct 211 ATACCTTCCTTGTCTTGGATTTT-TGCTT 238 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||||||||| || || ||||| || | | Sbjct 1116 CCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCACTC 1175 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| || ||||| |||| | ||||| || || || || Sbjct 1176 AGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1235 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||||| |||||| ||| | | || | |||||| | || || Sbjct 1236 ATACCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAACC 1295 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || ||||| || || |||||||| Sbjct 1296 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474203544661200