Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq67374 136 9e-27 >seq67374 Length=1687 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| || || || |||| |||||||||| || || Sbjct 438 CGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTA 497 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || |||||||||||||| ||||| ||| || ||| Sbjct 498 CGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCT 557 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || || ||| || | |||||||| || ||| || |||| Sbjct 558 TCCTTGTCCTGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCGACCTCCAG 616 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| || || Sbjct 617 AGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTG 655 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| || || || |||| |||||||||| || || Sbjct 894 CGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTA 953 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || |||||||||||||| ||||| || || ||| Sbjct 954 CGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCT 1013 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || |||||| || ||| || | |||||||| || ||| || |||| Sbjct 1014 TCTTTGTCCTGGAT-TTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCAACCTCCAG 1072 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| || || Sbjct 1073 AGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTG 1111 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||| || |||| |||||||||| || || | |||||| Sbjct 1131 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCT 1190 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || |||||||||||||| ||||| || || |||||| ||| Sbjct 1191 TCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCC 1250 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||| ||| || || | |||||||| || ||| || || | ||||| ||| Sbjct 1251 TGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAACCTCAAGGGTGATGGTC 1310 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || || || Sbjct 1311 TTGCCAGTGAGGGTTTTGACGAAGATCTG 1339 Score = 120 bits (132), Expect = 7e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| ||||| || || || |||| |||||||||| || || Sbjct 665 TCGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGT 724 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| |||||| || || ||||||||||||||||| || ||| || || Sbjct 725 ACGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGGATACC 784 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| ||||| || ||| || || || || | ||||||| || ||| || || | Sbjct 785 TTCCTTGTCCTGGAT-TTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAACCTCAA 843 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| || || Sbjct 844 GGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTG 883 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || || |||| ||| |||||| || || | ||||| Sbjct 1359 AGAACCAAGTGAAGAGTAGATTCTTTCTGGATGTTATAGTCACTCAGTGTACGACCATCC 1418 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| | | |||||| || ||| || |||||| ||| Sbjct 1419 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCC 1478 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || |||||| || || ||| | |||||||| || ||| || || | ||||| || Sbjct 1479 TGGAT-TTTTGCTTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCAAGGGTGATGGT 1537 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||| ||||| || || Sbjct 1538 CTTGCCAGTGAGGGTTTTGACAAAGATCTG 1567 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || || |||| |||||||||| || || | |||||| Sbjct 106 AGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCT 165 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||||||||||||||| || ||| || ||||| || Sbjct 166 TCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCT 225 Query 199538 TGAATCTTTTGCTT 199551 || || |||||||| Sbjct 226 TGGAT-TTTTGCTT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175624872848085