Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq190700 107 2e-18 >seq190700 Length=4627 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| || || |||||||| || ||||| ||||| | |||| | |||||| Sbjct 2669 AAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAA 2728 Query 37623 TGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682 || |||||||||| | | || ||||| | | || ||||| ||||| ||||| Sbjct 2729 TGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTTCC 2788 Query 37683 TCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGT 37742 ||| | |||||||| || || ||| |||||| ||| ||||||| || || Sbjct 2789 TCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCA 2848 Query 37743 ATTGGAAATATTACAAA 37759 ||||||||||| ||||| Sbjct 2849 ATTGGAAATATGACAAA 2865 Score = 105 bits (116), Expect = 8e-18 Identities = 106/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 37188 CAATGTAAACCT---TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATT 37244 |||||| ||| | |||||||| || || | |||||| || || || || || ||||| Sbjct 1628 CAATGTGAACTTACCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATG 1687 Query 37245 AAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCA 37304 | ||| | ||| || | ||| || |||| |||||| |||||||||||||| || || ||| Sbjct 1688 AGACCACGTTTCTTCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCA 1747 Query 37305 ACTGCTGCAAATGCTAC 37321 ||||| |||||||| || Sbjct 1748 ACTGCAGCAAATGCCAC 1764 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCA 36882 |||||||||| || |||||| |||||||| || | | ||| ||| || |||| Sbjct 564 TTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACCCA 623 Query 36883 TTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATA 36941 | ||||| ||||| ||||||| |||| || || || |||||||||||||| ||||| || Sbjct 624 TCTTTTGGTATTCACCAACTC-TCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAATG 682 Query 36942 TTTTCCATAAAATCAAATGGATT 36964 || ||||| || |||||||| || Sbjct 683 TTCTCCATGAAGTCAAATGGGTT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590700848710200