Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11709 89.7 1e-12 seq1679 87.8 3e-12 >seq11709 Length=107042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 241502 ACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCC 241561 ||||| |||||||| || | || ||||||||||||||| ||||||||| | || ||| Sbjct 58666 ACTTTTTCCTCCAGACGAGAAATCCGTTCCAGTTTGCGCTTTCGGCATTTGCTTGCAGCC 58725 Query 241562 AAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATC 241621 | | || | ||||| || | ||| |||||||| ||||| || ||||||||||| Sbjct 58726 ACTCTATTTCTCAGTCTTTTCCTTTCGGCCTTGATACGTTCTTGAGTTTCCATGTCGATT 58785 Query 241622 GGAGACTTGGGT 241633 || ||| | ||| Sbjct 58786 GGTGACATTGGT 58797 >seq1679 Length=151814 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| ||||| || | |||||| || ||| |||||||||| ||| |||||| Sbjct 43347 CTTCATGAAGAGGTCGGGAATCCACAGGGCATAGAAGAGGTCCCTGGCTCTCTGCTCGTC 43288 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | ||||| || || ||| || || |||||||||||||| ||||| || |||| Sbjct 43287 CTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAAAGATGTCCGCATGCCAGGGTTCCAG 43228 Query 213938 GTAGATGGCAAAGGCGCCCGG 213958 ||| || ||||| || || || Sbjct 43227 GTAAATTGCAAATGCTCCAGG 43207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928991403859200