Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq67374 140 6e-28 seq190700 113 9e-20 >seq67374 Length=1687 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| |||||| | ||| || || | ||||| ||||| ||| || || ||| Sbjct 657 ATACCACCTCGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 716 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || |||| ||||| || |||||||||||||| | | ||| ||||| || Sbjct 717 CTCAGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGA 776 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || |||||| ||| ||||| |||| ||||| | ||| Sbjct 777 GGGATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCA 836 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| ||||| | ||||| | ||| |||||||| Sbjct 837 ACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | ||| || || | ||||| ||||| ||| || || ||| Sbjct 885 ATACCACCACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 944 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || |||| ||||| || |||||||||||||| | | |||||| || ||| Sbjct 945 CTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGT 1004 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| ||| || || || | ||||| | ||| Sbjct 1005 GGGATACCTTCTTTGTCCTGGATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCA 1064 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| | ||||| | ||| |||||||| Sbjct 1065 ACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | ||||| ||||| ||| ||||| ||| Sbjct 1341 ATACCACCACGCAGACGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATGTTATAGTCA 1400 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || |||| |||| || || ||||||||||| |||||||| ||||| || Sbjct 1401 CTCAGTGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGA 1460 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| ||| ||||| || | ||||| | ||| Sbjct 1461 GGGATACCTTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATGGTGTCTGATGGTTCG 1520 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| || ||||| | ||||| | ||| ||||||||| Sbjct 1521 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 1571 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | ||| || || | ||||| ||||| ||| || || ||| Sbjct 429 ATACCACCACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 488 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || |||| |||| || |||||||||||||| | | |||||| || || Sbjct 489 CTCAGTGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGA 548 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| || || || | ||||| | ||| Sbjct 549 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCG 608 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| | ||||| | ||| |||||||| Sbjct 609 ACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| || || | ||||| |||||| ||| || || ||| Sbjct 1113 ATACCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCA 1172 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || |||| ||||| || |||||||||||||| | | |||||| || ||| Sbjct 1173 CTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGT 1232 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | ||||| | ||| Sbjct 1233 GGGATACCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCA 1292 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | || |||||||| Sbjct 1293 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 >seq190700 Length=4627 Score = 113 bits (124), Expect = 9e-20 Identities = 134/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTA 50282 ||||| |||||| ||| || || || || || || | | ||||||||| |||||| | Sbjct 2681 ACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAATGCCTTTCATCA 2740 Query 50283 TCTTTTAAATTTTCCCAA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCA 50341 ||||| | ||||||| | ||||| || ||||| ||||||||||| || ||||| Sbjct 2741 TCTTTCAGGCCTTCCCAATGGATCAAG-TCCTTTGACAAATCTACTTCCTCAGCCGTCCA 2799 Query 50342 AAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATA 50400 |||||| ||| | | |||||| ||||| || | |||||| || |||||| ||||||| Sbjct 2800 AAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCAATTGGAAATA 2858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981727007819250