Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq190700 113 8e-20 seq67374 109 1e-18 >seq190700 Length=4627 Score = 113 bits (124), Expect = 8e-20 Identities = 134/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 39525 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTA 39584 ||||| |||||| ||| || || || || || |||| | ||||||||| |||||| | Sbjct 2681 ACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAAATGCCTTTCATCA 2740 Query 39585 TCTTTTAAATTTTCCCAA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCA 39643 ||||| | ||||||| | ||||| || ||||| ||||||||||| || ||||| Sbjct 2741 TCTTTCAGGCCTTCCCAATGGATCAAG-TCCTTTGACAAATCTACTTCCTCAGCCGTCCA 2799 Query 39644 AAAAGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATA 39702 ||| || ||| | | |||||| ||||| || | |||||| || |||||| ||||||| Sbjct 2800 AAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTCAATTGGAAATA 2858 >seq67374 Length=1687 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| || || | ||||| ||||| || || || || Sbjct 885 ATACCACCACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 944 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || ||||| || ||||||||||| || | | ||||||||| ||| Sbjct 945 CTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGT 1004 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| ||| || || || || ||||| | ||| Sbjct 1005 GGGATACCTTCTTTGTCCTGGATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCA 1064 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| ||||| | ||||| | || |||||||| Sbjct 1065 ACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| ||| || | ||| || || | ||||| ||||| || || || || Sbjct 657 ATACCACCTCGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 716 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || ||||| || ||||||||||| || | | ||| || || || Sbjct 717 CTCAGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGA 776 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || |||||| ||| ||||| ||||| ||||| | ||| Sbjct 777 GGGATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCA 836 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||| ||||| | ||||| | || |||||||| Sbjct 837 ACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | ||| || || | ||||| |||||| || || || || Sbjct 1113 ATACCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCA 1172 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || ||||| || ||||||||||| || | | ||||||||| ||| Sbjct 1173 CTCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGT 1232 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| || ||||| || || ||||| | ||| Sbjct 1233 GGGATACCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCA 1292 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 1293 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| || || | ||||| ||||| || || || || Sbjct 429 ATACCACCACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 488 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || |||| || ||||||||||| || | | ||||||||| || Sbjct 489 CTCAGTGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGA 548 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| ||| || || || || ||||| | ||| Sbjct 549 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCG 608 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| ||||| | ||||| | || |||||||| Sbjct 609 ACCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902666619279000