Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq67374 132 4e-26 seq1679 93.3 4e-14 >seq67374 Length=1687 Score = 132 bits (146), Expect = 4e-26 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 1570 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCATCA 1511 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||| ||||| ||||||||||| || ||||| ||||| Sbjct 1510 GACACCATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCTCCAGATCAG 1451 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | ||||||||||| || || |||||||||||| ||| | || || || |||| Sbjct 1450 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCG-TACAC-TGAGTGACTATA 1393 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || || ||||| || || |||||||| | || |||| || || Sbjct 1392 ACATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGTCTGCGTGGTGG 1344 Score = 118 bits (130), Expect = 1e-21 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || ||||| || || || || || ||| | | Sbjct 658 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCA 599 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| ||||| ||||| || ||||| || || Sbjct 598 GACACCATTGAGAACGTCAAAGCCAAA-ATCCAGGACAAGGAAGGCATCCCTCCAGACCA 540 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 ||| ||| | |||||||| || || |||||||| ||| ||| | || || || || Sbjct 539 ACAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCG-TACAC-TGAGTGACTAC 482 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || ||||| || || |||||||| Sbjct 481 AACATCCAGAAAGAATCTACTCTTCACTTGGT 450 Score = 118 bits (130), Expect = 1e-21 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || ||||| || || || || || ||| | | Sbjct 1114 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCA 1055 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| ||||| ||||| ||||||||||| || || || || || Sbjct 1054 GACACCATTGAGAACGTCAAAGCAAAA-ATCCAGGACAAAGAAGGTATCCCACCAGACCA 996 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 ||| ||| | |||||||| || || ||| |||| ||| ||| | || || || || Sbjct 995 ACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCG-TACAC-TGAGTGACTAC 938 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || ||||| || || |||||||| Sbjct 937 AACATCCAGAAAGAATCTACTCTTCACTTGGT 906 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || ||||| || || || || || ||| | | Sbjct 886 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCATCA 827 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 826 GACACTATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 767 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||| ||| | | || || || ||| Sbjct 766 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACACTGAGTGACTACAAC 707 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || |||||||| Sbjct 706 ATCCAGAAAGAATCTACTCTTCACTTGGT 678 Score = 102 bits (112), Expect = 7e-17 Identities = 121/159 (76%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 24775 AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGAT 24834 |||| ||| ||||| ||||||||||| ||||| || ||||| ||||| || ||| | || Sbjct 245 AACGTCAAAGCAAAA-ATCCAAGACAAGGAAGGTATCCCTCCAGATCAGCAGCGTCTCAT 187 Query 24835 CTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAG 24892 ||||||||| ||||||||||| ||| ||| | || || || || ||||| || || Sbjct 186 CTTTGCCGGCAAACAGCTGGAAGATGGTCG-TACAC-TGAGTGACTACAACATCCAGAAA 129 Query 24893 GAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || || |||||||| | || |||| || ||| Sbjct 128 GAATCTACTCTTCACTTGGTACTCCGTCTGCGTGGTGGC 90 Score = 100 bits (110), Expect = 3e-16 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 1342 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCA 1283 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| ||||| ||||| ||||||||||| || || || || || Sbjct 1282 GACACCATTGAGAATGTTAAGGCAAAA-ATCCAGGACAAAGAAGGTATCCCACCAGACCA 1224 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 ||| ||| | |||||||| || || ||| |||| ||| ||| | || || || || Sbjct 1223 ACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCG-TACAC-TGAGTGACTAC 1166 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || |||||||| Sbjct 1165 AACATCCAGAAAGAGTCTACTCTTCACTTGGT 1134 >seq1679 Length=151814 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 139119 GCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTG 139178 ||||||||| |||||||||| ||| | || || |||||||| || || | || || || Sbjct 45899 GCTGTATTCCACAATTTCGGTACAGAGGTTGCTGCACTTGATAGTTCCCAGGTTCTGCTG 45840 Query 139179 ATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || ||| | ||| || ||||| ||||||||||||||||| ||||| ||||| Sbjct 45839 GTTTGATTTCCTGTTGCAGGCATCCTTGTAAAGCATATACGGAGTGCCCGTTTC 45786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448670194991400