Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq67374 127 2e-24 >seq67374 Length=1687 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || |||||||| || ||||| || || | || || | || Sbjct 671 ACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTG-TACGGC 729 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || || |||||| | || | | |||||||| || || ||||| || | Sbjct 730 CATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCT 789 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| || | ||| ||||||| | || | |||||| || |||| || ||||| || | Sbjct 790 TGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAACCTCAAGGGTGA 849 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | |||||| ||||| |||||||| Sbjct 850 TGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || |||||||| || ||||| || || | || || | ||| Sbjct 899 ACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTG-TACGAC 957 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || || |||||| | || | | || || || || || ||||| |||| Sbjct 958 CATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTT 1017 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| || | |||| |||||| | || | ||||| || |||| || || ||||| | Sbjct 1018 TGTCCTGGATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCAACCTCCAGAGTGA 1077 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | |||||| ||||| |||||||| Sbjct 1078 TGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| ||||| || |||||||| || ||||| || || | || || | ||| Sbjct 443 ACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTG-TACGAC 501 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || || || || |||||| | || | | || || || || || || || || | Sbjct 502 CATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCT 561 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| || | ||| |||||| | || | ||||| || |||| || || ||||| | Sbjct 562 TGTCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCGACCTCCAGAGTGA 621 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | |||||| ||||| |||||||| Sbjct 622 TGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384194523548955