Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq67374 170 4e-37 seq30926 104 5e-17 seq439 93.3 8e-14 seq2045 87.8 4e-12 >seq67374 Length=1687 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct 1342 TACCACCACGCAGACGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATGTTATAGTCAC 1401 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || || || || ||||||||||| | ||| || |||||||||| Sbjct 1402 TCAGTGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGAG 1461 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || || |||||||| ||||||||||| || || ||||| | Sbjct 1462 GGATACCTTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATGGTGTCTGATGGTTCGA 1521 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || | || || |||||||| || | || || ||||| ||||||||||| Sbjct 1522 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATTAT 1573 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||||||||| || || || ||| Sbjct 430 TACCACCACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAC 489 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| ||||| || || || ||||||||||| || | ||||| ||||||| Sbjct 490 TCAGTGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAG 549 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || ||||| || || ||||| || || ||||| | Sbjct 550 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCGA 609 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || || ||||| || | || || ||||| |||||||| Sbjct 610 CCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || || ||||| ||||||||||||||||| || || || ||| Sbjct 658 TACCACCTCGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAC 717 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || ||||| | || || ||||||||||| || | || |||||||||| Sbjct 718 TCAGTGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAG 777 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || ||||| ||||| ||||| || || ||||| | Sbjct 778 GGATACCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAA 837 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || ||||| || | || || ||||| |||||||| Sbjct 838 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||||||||| || || || ||| Sbjct 886 TACCACCACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAC 945 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| ||||| | || || ||||||||||| || | ||||| ||||| | Sbjct 946 TCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTG 1005 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || || |||||||| || || ||||| || || ||||| | Sbjct 1006 GGATACCTTCTTTGTCCTGGATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCAA 1065 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || || ||||| || | || || ||||| |||||||| Sbjct 1066 CCTCCAGAGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| ||||||||||||||||| || || || ||| Sbjct 91 CCACCACGCAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTC 150 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || ||||| || |||||||| || | || ||||||||||| Sbjct 151 AGTGTACGACCATCTTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGG 210 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 || |||||||| ||||| || |||||||| || || ||||| || Sbjct 211 ATACCTTCCTTGTCTTGGATTTTTGCTTTGACGTTCTCAATGGT 254 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||| |||||||| || || || ||| Sbjct 1114 TACCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAC 1173 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| ||||| | || || ||||||||||| || | ||||| ||||| | Sbjct 1174 TCAGTGTACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTG 1233 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || || ||||| || ||||| ||||| || || ||||| | Sbjct 1234 GGATACCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAA 1293 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | || || || || |||||||| Sbjct 1294 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 >seq30926 Length=14648 Score = 104 bits (114), Expect = 5e-17 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 198354 CAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAA 198413 || ||||| ||| | | ||||| ||||||||| | ||| | || ||||||||||| || Sbjct 554 CAGATACAAATGGTCAATGAAGGCAAAATGCATGGATTTCTGAGGATGTACTGGGCCAAG 495 Query 198414 AAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAAC 198473 |||||||| ||||||||| | ||||||| | ||| || | | |||||||| || Sbjct 494 AAGATACTGGAATGGACAGAATCACCGGAGCAGGCTCTGGAATTTGCCATCTATCTCAAT 435 Query 198474 AATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTT-GTATGTGGTCTAT 198532 |||| || ||||| || || | ||||| || || || || |||| |||| | | ||| Sbjct 434 GATAAATATGAACTGGATGGTAGAGATCCCAATGGCTATGTTGGTTAGTATCT-TTTTAT 376 Query 198533 TTGCGGATTAC 198543 ||| || |||| Sbjct 375 TTG-GGCTTAC 366 >seq439 Length=1034337 Score = 93.3 bits (102), Expect = 8e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||||||||| || || || ||| | | || ||||||| ||||||||| ||||||| Sbjct 27993 CTTTCTGTATATTGTAGTCTGACAGAGTGCGTCCATCTTCTAATTGTTTTCCTGCAAAGA 27934 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 | | ||||||||||||||| || |||||| Sbjct 27933 TCAATCTTTGTTGATCTGGTGGAATTCCT 27905 >seq2045 Length=971168 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || ||||| || ||||||||||||||||| || || || || |||||| | | || ||| Sbjct 725451 AGCACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGTACGTCCATCT 725510 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || || |||||||| ||||| || | || || |||||||| || || ||| Sbjct 725511 TCAAGCTGTTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGGATACCT 725561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979081626088445