Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq67374 118 2e-21 >seq67374 Length=1687 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| |||||| |||| || ||| || ||| Sbjct 1111 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCAGAC 1052 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||||||| || || || |||||||| || || ||| || Sbjct 1051 ACCATTGAGAACGTCAAAGCAAAA-ATCCAGGACAAAGAAGGTATCCCACCAGACCAACA 993 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || ||||||||||||||||| | || || || |||||| | Sbjct 992 GCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAACAT 933 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||||||||| |||||||||||| Sbjct 932 CCAGAAAGAATCTACTCTTCAC 911 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| |||||| |||| || ||| || ||| Sbjct 655 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCAGAC 596 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || || || || ||||| || || ||| || Sbjct 595 ACCATTGAGAACGTCAAAGCCAAA-ATCCAGGACAAGGAAGGCATCCCTCCAGACCAACA 537 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || |||||| |||||||||| | || || || |||||| | Sbjct 536 GCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTACAACAT 477 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||||||||| |||||||||||| Sbjct 476 CCAGAAAGAATCTACTCTTCAC 455 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || ||||| | || || ||| || ||| Sbjct 1339 CAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCAGAC 1280 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||| || || || |||||||| || || ||| || Sbjct 1279 ACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAACAG 1220 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||||||||| | || || || |||||| || Sbjct 1219 CGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAACATC 1160 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||||||||| Sbjct 1159 CAGAAAGAGTCTACTCTTCAC 1139 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || || || ||||| | || || ||| || ||| Sbjct 1567 CAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCATCAGAC 1508 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||||||| || || || |||||||| || || || || Sbjct 1507 ACCATTGAAAATGTCAAAGCAAAA-ATCCAGGACAAAGAAGGTATCCCTCCAGATCAGCA 1449 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||| || || |||||| |||| ||||| | || || || || ||| | Sbjct 1448 GAGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACACTGAGTGACTATAACAT 1389 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||| |||||||||||| | ||| Sbjct 1388 CCAGAAAGAATCTACTCTTCACTTGGTT 1361 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| ||||| | || || ||| || ||| Sbjct 883 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCATCAGAC 824 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || || || || ||||| || || || || Sbjct 823 ACTATTGAGAATGTCAAAGCTAAA-ATCCAGGACAAGGAAGGTATCCCTCCAGATCAGCA 765 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || ||||||||||||||||| | || || || |||||| | Sbjct 764 GCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACACTGAGTGACTACAACAT 705 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| |||||||||||| | || | | |||||| Sbjct 704 CCAGAAAGAATCTACTCTTCACTTGGTACTCCGTCTTCGA 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178515965547855