Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq190700 154 2e-32 seq1679 113 6e-20 seq213 95.1 2e-14 >seq190700 Length=4627 Score = 154 bits (170), Expect = 2e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| |||||||| || || |||||||| || |||||||| |||||||||||| ||||| Sbjct 2667 CCAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAA 2726 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| ||||||| | ||| | ||| | | | || ||||| | |||||||| Sbjct 2727 AATGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTT 2786 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | ||||| |||||||| ||||| || || ||||||||||| | ||| |||||| |||||| Sbjct 2787 CCTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATT 2846 Query 40179 GTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 |||||||| || ||||| | |||| |||| Sbjct 2847 CAATTGGAAATATGACAAAACGCCTTGGGTTTT 2879 Score = 140 bits (154), Expect = 4e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || || || | |||||||| |||||||| || | Sbjct 1641 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCT 1700 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || | ||||| ||||||||||||||||| || || ||||| ||||||| Sbjct 1701 TCAACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATG 1760 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | | || || |||| || | ||| | |||||| | ||||||| || | Sbjct 1761 CCACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTG 1820 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| |||||||| | || || || ||||| || ||||| Sbjct 1821 CCTTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGATA 1866 Score = 105 bits (116), Expect = 9e-18 Identities = 109/142 (77%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 39267 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCA 39323 || ||||||||||| |||||| | ||| | | |||||| | |||||| || |||| Sbjct 564 TTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACCCA 623 Query 39324 TTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 | ||||||||||||||||| | ||||| || || || || || ||||||| ||| || | Sbjct 624 TCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAATGT 683 Query 39384 TTTCCATGAAATCAAACGGATT 39405 | |||||||| ||||| || || Sbjct 684 TCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 113 bits (124), Expect = 6e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || ||||||||||| ||||| | || || || || ||||||||||||||||| | Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-A 69634 ||| | | | ||| || || ||||| || || ||||||||||| || || ||| | Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGC-ATAGA 43313 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 |||| || |||| ||| | || || ||||| ||||| || || ||| || || || | Sbjct 43312 AGAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAA 43253 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || | |||||| ||||| || || || || Sbjct 43252 AGATGTCCGCATGCCAGGGTTCCAGGTAAATTGC 43219 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || ||||| || || || || |||||||| ||||| || ||||| || || || Sbjct 45886 ATTTCGGTACAGAGGTTGCTGCACTTGATAGTTCCCAGGTTCTGCTGGTTTGATTTCCTG 45827 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || ||||| ||||||||||| ||| ||||||| || |||||| |||||| ||| || || Sbjct 45826 TTGCAGGCATCCTTGTAAAGCATATACGGAGTGCCCGTTTCAGTCTGAGCTTCAATGAT 45768 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || |||||||||| || | || || || | || || ||||| || || | Sbjct 51950 TCCAGGCGAAGAAATGCATGCTGGAAAGCTTTCCGTAGTTCGGTTCCGCTATGTGGATGT 51891 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||| ||||||||||| |||||||| || |||||| | || ||| ||| Sbjct 51890 TGAGTGACTGGCTTTGGTCGATGAAAGCACCTCTATCAGCAGCCATTATGATGATATTCT 51831 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| || ||||| | ||| | | | | ||| || || ||||||| Sbjct 51830 TCTGAGATATCTCCCACACTGTCCTGTACAGCATTTTAATGTCTTCTGGAA 51780 >seq213 Length=780240 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 39695 TTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCA 39754 ||| ||| |||||| | || ||||| | ||||| ||||| | ||||| ||||| ||| Sbjct 601881 TTTCTGAACCAAAACACTGCCGCAAACGCACCAGAGAAGAAAACCCCTTCGACTGCAGCA 601940 Query 39755 AATGCAACAAGTCTCTCTCCGTAACTTGTATCAT---TATGTATCCACTTCTGTGCCCAA 39811 ||||| ||||||||||| || | |||| |||| | |||||||| |||||| Sbjct 601941 AATGCTACAAGTCTCTCACCAAACGTTGTGTCATGTGACTCTATCCACTGTATTGCCCAG 602000 Query 39812 TCAGCTTTCTTCTTTACACAAGGCATTG 39839 || |||||| |||| ||||| |||| || Sbjct 602001 TCTGCTTTCCTCTTCACACACGGCACTG 602028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685034783998200