Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq67374 172 6e-38 >seq67374 Length=1687 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 |||||||| ||||||||||| || || || |||||||| || || |||||||| || || Sbjct 1573 ATAATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCA 1514 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| |||| | || || ||||| |||||||| || || || |||||||| Sbjct 1513 TCAGACACCATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCTCCAGAT 1454 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | | || |||||||| ||||| || ||||||| |||||| || |||||| Sbjct 1453 CAGCAGAGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACACTGAGTGACTAT 1394 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || ||||| |||||||| | || | ||||| || ||||| Sbjct 1393 AACATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGTCTGCGTGGTGG 1344 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || ||||| || || ||||| ||||| || || Sbjct 658 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCA 599 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || ||||| ||||||||||| || || ||||||||||| Sbjct 598 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 539 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| || || |||| |||||| || ||||| || Sbjct 538 CAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTACAAC 479 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| |||||||| | || | |||||||| ||||| Sbjct 478 ATCCAGAAAGAATCTACTCTTCACTTGGTACTCCGTCTTCGTGGTGG 432 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || ||||| || || || ||||||||||| || Sbjct 886 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCATCA 827 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || |||||||| ||||||||||| || || |||||||| ||| Sbjct 826 GACACTATTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 767 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| | || |||| ||||| || ||||| || Sbjct 766 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACACTGAGTGACTACAAC 707 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| |||||||| | || | |||||||| ||||| Sbjct 706 ATCCAGAAAGAATCTACTCTTCACTTGGTACTCCGTCTTCGAGGTGG 660 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || ||||| || || ||||| |||||||| || Sbjct 1114 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCA 1055 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || ||||| |||||||| || || || || |||||||| Sbjct 1054 GACACCATTGAGAACGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAA 995 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| | || |||| |||||| || ||||| || Sbjct 994 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAAC 935 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| |||||||| | || | |||||||| ||||| Sbjct 934 ATCCAGAAAGAATCTACTCTTCACTTGGTACTCCGTCTTCGTGGTGG 888 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || |||||||| || || ||||||||||| || Sbjct 1342 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCA 1283 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||| || || || || |||||||| Sbjct 1282 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAA 1223 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| | || |||| |||||| || ||||| || Sbjct 1222 CAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAAC 1163 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || |||||||| | || | ||||| || ||||| Sbjct 1162 ATCCAGAAAGAGTCTACTCTTCACTTGGTACTCCGTCTCCGTGGTGG 1116 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| || | || || ||||| || |||||||| || || |||||||| |||||||| Sbjct 252 CATTGAGAACGTCAAAGCAAAAATCCAAGACAAGGAAGGTATCCCTCCAGATCAGCAGCG 193 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| || ||||| || || || || || |||| |||||| || ||||| || |||| Sbjct 192 TCTCATCTTTGCCGGCAAACAGCTGGAAGATGGTCGTACACTGAGTGACTACAACATCCA 133 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| |||||||| | || | ||||| || ||||| Sbjct 132 GAAAGAATCTACTCTTCACTTGGTACTCCGTCTGCGTGGTGG 91 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || ||||||||||| || ||||||||||| || Sbjct 430 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACTATCACCCTTGAGGTTGAACCATCA 371 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || | ||||| ||| | ||||| ||||| |||||||| || || || || Sbjct 370 GACACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568754486295600