Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq67374 170 4e-37 seq439 96.9 8e-15 >seq67374 Length=1687 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| || ||||| |||||||| || || || || Sbjct 437 ACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGT 496 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || ||||| || || |||||||| ||||| | || Sbjct 497 ACGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCC 556 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||| || ||| ||||| || |||||||| || ||| ||||| || Sbjct 557 TTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCGACCTCCAG 616 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || ||||| || || ||||| | |||||| Sbjct 617 AGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 658 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| || ||||| |||||||| || || || || Sbjct 893 ACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGT 952 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || ||||| || || |||||||| || || | || Sbjct 953 ACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACC 1012 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||||||||| ||| ||| ||||| || |||||||| || ||||||||| || Sbjct 1013 TTCTTTGTCCTGGATTTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCAACCTCCAG 1072 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || ||||| || || ||||| | |||||| Sbjct 1073 AGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1114 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || ||||| ||||||||||| || || || | ||||| Sbjct 1359 AGAACCAAGTGAAGAGTAGATTCTTTCTGGATGTTATAGTCACTCAGTGTACGACCATCC 1418 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || || || ||||| | ||||| |||||| Sbjct 1419 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCC 1478 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| ||| || ||||| |||||||| || ||| ||||| || ||||| ||| Sbjct 1479 TGGATTTTTGCTTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCAAGGGTGATGGTC 1538 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || ||||| | ||||||| Sbjct 1539 TTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 1571 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| |||||||| || || || || | |||||| Sbjct 1131 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCT 1190 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| || || |||||||| || || | ||||| |||||| Sbjct 1191 TCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCC 1250 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| || || || || |||||||| || ||||||||| || ||||| ||| Sbjct 1251 TGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAACCTCAAGGGTGATGGTC 1310 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | |||||| Sbjct 1311 TTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||||||||| || ||||| |||||||| || || || || Sbjct 666 CGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTA 725 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| |||||| || || ||||| || || || || || ||||| | ||| Sbjct 726 CGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCT 785 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||||||||| || ||| || || || || ||||| || ||||||||| || Sbjct 786 TCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAACCTCAAGG 845 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || ||||| | |||||| Sbjct 846 GTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 886 Score = 114 bits (126), Expect = 3e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || ||||| |||||||| || || || || | |||||| Sbjct 106 AGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCT 165 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || || || || || ||||| | ||||||||||| Sbjct 166 TCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCT 225 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGT 211053 ||||| ||| ||| ||||| || ||||||| Sbjct 226 TGGATTTTTGCTTTGACGTTCTCAATGGTGT 256 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| ||||||||||| ||| || || || || |||||||| || ||||||||| Sbjct 327 CCTTCTTTGTCCTGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAACCTCA 386 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| || || ||||| | |||||| Sbjct 387 AGGGTGATAGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 430 >seq439 Length=1034337 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| ||||||||||| ||| || || ||||| ||||| |||||| ||||||||| Sbjct 25747 CCTTCTTTGTCCTGGATTTTTGCCTTGACATTTTCTATGGTATCAGAGGGTTCAACCTCA 25688 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 |||||||| || || || || || ||||| ||||| | |||||| ||| Sbjct 25687 AGAGTGATGGTTTTCCCAGTTAGGGTCTTCACAAAAATCTGCATCTTA 25640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155910556403075