Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq67374 134 3e-26 seq1939 102 2e-16 >seq67374 Length=1687 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||| || || || | |||||| Sbjct 1131 AGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCT 1190 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| ||||| || || |||||||| || || |||||||| ||||| Sbjct 1191 TCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACCTTCTTTGTCC 1250 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| ||| ||| ||| || ||||||||||| | ||| || || | ||||| ||| Sbjct 1251 TGGATTTTTGCCTTAACATTCTCAATGGTGTCTGATGGTTCAACCTCAAGGGTGATGGTC 1310 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | ||||| Sbjct 1311 TTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 1342 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| |||||||| |||| ||||| || || || Sbjct 437 ACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGT 496 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| || || |||||||| || || || || Sbjct 497 ACGACCATCTTCCAGCTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCC 556 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| ||||| ||| || || || || ||||||||||| | ||| || || | Sbjct 557 TTCCTTGTCCTGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCTGATGGTTCGACCTCCA 615 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||| || | ||||| Sbjct 616 GAGTGATGGTTTTGCCAGTGAGGGTTTT 643 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| |||||||| |||| ||||| || || || Sbjct 893 ACGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGT 952 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||| ||||| || || |||||||| || || ||||| Sbjct 953 ACGACCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCTGGTGGGATACC 1012 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||| ||||| |||||||| | | || ||||||||||| | ||| || || | Sbjct 1013 TTCTTTGTCCTGGAT-TTTTGCTTTGACGTTCTCAATGGTGTCTGATGGTTCAACCTCCA 1071 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||| || | ||||| Sbjct 1072 GAGTGATGGTTTTGCCAGTGAGGGTTTT 1099 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| |||||||| |||| || || || || || | ||||| Sbjct 1359 AGAACCAAGTGAAGAGTAGATTCTTTCTGGATGTTATAGTCACTCAGTGTACGACCATCC 1418 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | || || || || || || |||||||| ||||| Sbjct 1419 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCTTTGTCC 1478 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| |||||||| ||| ||| ||||||||||| | ||| || || | ||||| || Sbjct 1479 TGGAT-TTTTGCTTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCAAGGGTGATGGT 1537 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| || | ||||| | || | |||||| Sbjct 1538 CTTGCCAGTGAGGGTTTTGACAAAGATCTGCATT 1571 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| ||||| |||||||| |||| ||||| || || || Sbjct 666 CGAAGACGGAGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTA 725 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | |||||| ||||| ||||| || || || || || || || |||||| Sbjct 726 CGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCT 785 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| ||| || || ||| || || |||||||| | ||| || || | Sbjct 786 TCCTTGTCCTGGAT-TTTAGCTTTGACATTCTCAATAGTGTCTGATGGTTCAACCTCAAG 844 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||| || | ||||| Sbjct 845 GGTGATGGTTTTGCCAGTGAGGGTTTT 871 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/134 (77%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| |||||||| |||| ||||| || || || | |||||| Sbjct 106 AGTACCAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCACTCAGTGTACGACCATCT 165 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || || || || || || || ||||||||||||||| Sbjct 166 TCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATACCTTCCTTGTCT 225 Query 225622 TGGATCTTTTGCTT 225635 ||||| |||||||| Sbjct 226 TGGAT-TTTTGCTT 238 >seq1939 Length=922702 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||| ||||| ||||| |||||||| || ||||| || || |||||||| || || Sbjct 762920 TGTCCATCTGTAATTGAGATCACATTTGTTGGAATATAGGCTGACACATCACCGGCCTGA 762979 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||| | |||||| |||||||| || ||||||||||| || Sbjct 762980 GTTTCAATAACAGGCAAGGCTGTCAGGGATCCACCACCGAA 763020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189196415068970