Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq190700 127 3e-24 seq1679 127 3e-24 seq213 91.5 2e-13 >seq190700 Length=4627 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| || ||||| || || |||||||| ||||||||||| || ||||||||| ||||| Sbjct 2667 CCAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAA 2726 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| |||| | |||| | ||| | | | || ||||| | |||||||| Sbjct 2727 AATGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTT 2786 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | ||||| ||||||||||| || || |||||||| ||||| | ||| |||||| |||| Sbjct 2787 CCTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATT 2846 Query 48703 GGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||||| || || ||||| | |||| |||| Sbjct 2847 CAATTGGAAATATGACAAAACGCCTTGGGTTTT 2879 Score = 114 bits (126), Expect = 2e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || || || | || ||||| || |||||||| || Sbjct 1643 TCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCTTC 1702 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || |||| || || |||||||||||||| || || || || || |||||||| Sbjct 1703 AACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATGCC 1762 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGT---TGTGTATCCACCGTTGTGCCCAATCAGCC 48341 | | || || |||| || | || || |||||| | ||||||| || ||| Sbjct 1763 ACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTGCC 1822 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 |||||||| |||||||| | || || || ||||| || ||| Sbjct 1823 TTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGA 1864 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 47791 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCA 47847 || ||||||||||| |||||| | ||| | | |||||| || ||||| || |||| Sbjct 564 TTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACCCA 623 Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907 | ||||| |||||||| || | ||||| || || || || || ||||||| ||| || | Sbjct 624 TCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAATGT 683 Query 47908 TTTCCATAAAATCAAATGGATT 47929 | ||||| || |||||||| || Sbjct 684 TCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| ||||||||||| ||||| | || || ||||| |||||||| |||||||| | Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 |||||| | ||| || || ||||| ||||| || || ||||| || ||| || Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGCATAGAA 43312 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 || || | || ||| || || || ||||| |||||||| || ||| || || || | Sbjct 43311 GAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAAA 43252 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 || || | |||||| ||||| || || ||||| | ||||||| || Sbjct 43251 GATGTCCGCATGCCAGGGTTCCAGGTAAATTGCAAATGCTCCAGGGCG 43204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||||||||||| | || || || | || || ||||| || || | Sbjct 51950 TCCAGGCGAAGAAATGCATGCTGGAAAGCTTTCCGTAGTTCGGTTCCGCTATGTGGATGT 51891 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||| ||||||||||| ||||||||||| |||||| | || || ||| Sbjct 51890 TGAGTGACTGGCTTTGGTCGATGAAAGCACCTCTATCAGCAGCCATTATGATGATATTCT 51831 Query 76969 TTTGAGGAATTTCCCA 76984 | |||| || ||||| Sbjct 51830 TCTGAGATATCTCCCA 51815 >seq213 Length=780240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 ||||| || || ||||||||||| || | ||||| | | | |||||| || || ||| Sbjct 598801 AGTCTGTCAGCCACGAATTCTATGTACTTCTTCATTAGTACTGCATTCATGCCAATCAGT 598860 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 ||||| || || || || ||||| || || || ||||||| ||| || ||| Sbjct 598861 GCCACTGGCAGGGCATCTGTCCAGAACTCCTGCTCAATGTTGACAGCTTCCTTGATGATC 598920 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 |||||| | || ||| || | || || || || | | | ||||||||| Sbjct 598921 TGTGTTACTCTCTCTGGACTGGGCTTGTTCACCAGGTGGTTGTATAAAAGACATGCAAAG 598980 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 ||||| || || |||||||||| || || | ||| || |||||||| | ||||||| Sbjct 598981 TCACAGTGCAGGCCTTCATCTCGGCTGATAAGTTCATTGGAAAATGTTAACCCGGGCA 599038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692773613263200