Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq190700 150 3e-31 seq1679 109 8e-19 seq213 105 1e-17 >seq190700 Length=4627 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| || ||||| || || |||||||| ||||||||||| |||||||||||| |||||| Sbjct 2668 CAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAAAAAGCCAATACATGTGAAATAAA 2727 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || ||||||| |||| | ||| | | | || ||||| | ||||||||| Sbjct 2728 ATGCCTTTCATCATCTTTCAGGCCTTCCCAATGGATCAAGTCCTTTGACAAATCTACTTC 2787 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||||| ||||| |||||||| || |||||||| ||||| | ||| |||||| |||||| Sbjct 2788 CTCAGCCGTCCAAAATGACGCTTCCGCTTTTTTGTACATCTGCCAGATATCATGATATTC 2847 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 || ||||| || ||||| | |||| |||| | |||| ||||| Sbjct 2848 AATTGGAAATATGACAAAACGCCTTGGGTTTTCTCTGAGTAGTGGTTC 2895 Score = 105 bits (116), Expect = 1e-17 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || || || | |||||||| || ||||| || || Sbjct 1643 TCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAAGCCAGGCATGAGACCACGTTTCTTC 1702 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || || | || || |||||||||||||| || || || || || || ||||| Sbjct 1703 AACCAGAAGATTGATGCAAATGATCCAGAAAAGAAGATTCCCTCAACTGCAGCAAATGCC 1762 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA---TCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 || | | || || |||| ||| ||| | ||||| || | ||||| || ||| Sbjct 1763 ACGATGCGTTCACCATAACATGCATTGTCAGAGTTTATCCAACTGAGTGCCCAGTCTGCC 1822 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || ||||| |||||||| | || || || ||||| || ||| Sbjct 1823 TTCTTCTTCACACAAGGTAAAGTCTCAATTGCATTGAACAGA 1864 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 46280 TTCTTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCA 46336 || |||||||||| |||||| | ||| | | |||||| | |||||| || |||| Sbjct 564 TTTTTTAAAAGTCAGCATCTAGGGTAAATTTGTGATCTTCAGGACTTGACATGACACCCA 623 Query 46337 TTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 | |||||||||||||| || | ||||| || || || || || ||||||| ||| || | Sbjct 624 TCTTTTGGTATTCACCAACTCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAGTGAAATGT 683 Query 46397 TTTCCATAAAATCAAACGGATT 46418 | ||||| || ||||| || || Sbjct 684 TCTCCATGAAGTCAAATGGGTT 705 >seq1679 Length=151814 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||| ||||||||||| ||||| | || || || || ||||| ||||||||||| | Sbjct 43431 TTCAAACTCATCTCCCCACACATCGTGCAGCCCTGGGCACTCATTTGGACACATCAACGT 43372 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || | ||| || || ||||| ||||| || || ||||| || ||| || Sbjct 43371 CCAGTCTTTGTTGGCCTCCACACGCTTCATGAAGAGGTCGGGAATCCACAGGGCATAGAA 43312 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 || || | || ||| | || || ||||| |||||||| || ||| ||||| || | Sbjct 43311 GAGGTCCCTGGCTCTCTGCTCGTCCTTTCCAGTATTCTTCTTGGCATCCAGGAATTCAAA 43252 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || | |||||| ||||| || || || || Sbjct 43251 GATGTCCGCATGCCAGGGTTCCAGGTAAATTGC 43219 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||||||||||| | || || || |||| || ||||| || || | Sbjct 51950 TCCAGGCGAAGAAATGCATGCTGGAAAGCTTTCCGTAGTTCGGTTCCGCTATGTGGATGT 51891 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||| ||||||||||| ||||||||||| |||||| | || || ||| Sbjct 51890 TGAGTGACTGGCTTTGGTCGATGAAAGCACCTCTATCAGCAGCCATTATGATGATATTCT 51831 Query 75564 TTTGAGGAATTTCCCA 75579 | |||| || ||||| Sbjct 51830 TCTGAGATATCTCCCA 51815 >seq213 Length=780240 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 ||||| || || ||||||||||| ||| | ||||| | | | |||||| || || ||| Sbjct 598801 AGTCTGTCAGCCACGAATTCTATGTACTTCTTCATTAGTACTGCATTCATGCCAATCAGT 598860 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || || || ||||| || ||||| ||||||| ||| || ||| Sbjct 598861 GCCACTGGCAGGGCATCTGTCCAGAACTCCTGCTCAATGTTGACAGCTTCCTTGATGATC 598920 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 ||||||| | || ||| || | || || || || | | | ||||||||| Sbjct 598921 TGTGTTACTCTCTCTGGACTGGGCTTGTTCACCAGGTGGTTGTATAAAAGACATGCAAAG 598980 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||| || ||||||||||||| || || | ||| || |||||||| | ||| |||| Sbjct 598981 TCACAGTGCAGGCCTTCATCTCGGCTGATAAGTTCATTGGAAAATGTTAACCCGGGCA 599038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710989381281600